Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0391 and Atu0392 overlap by 4 nucleotides Atu0392 and Atu0393 overlap by 1 nucleotides Atu0393 and Atu0394 are separated by 42 nucleotides
Atu0391: Atu0391 - ABC transporter, nucleotide binding/ATPase protein, at 384,108 to 385,139
Atu0391
Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062
Atu0392
Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883
Atu0393
Atu0394: Atu0394 - ABC transporter, substrate binding protein (sugar), at 386,926 to 388,218
Atu0394
Position (kb) 386
387 Strain fitness (log2 ratio) -1
0
1
2 at 385.108 kb on + strand at 385.220 kb on + strand at 385.285 kb on - strand, within Atu0392 at 385.322 kb on - strand, within Atu0392 at 385.396 kb on + strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.565 kb on + strand, within Atu0392 at 385.688 kb on + strand, within Atu0392 at 385.696 kb on - strand, within Atu0392 at 385.703 kb on + strand, within Atu0392 at 385.762 kb on + strand, within Atu0392 at 385.773 kb on - strand, within Atu0392 at 385.825 kb on + strand, within Atu0392 at 385.863 kb on + strand, within Atu0392 at 385.927 kb on + strand, within Atu0392 at 385.934 kb on - strand, within Atu0392 at 386.006 kb on + strand at 386.014 kb on - strand at 386.096 kb on + strand at 386.151 kb on - strand, within Atu0393 at 386.192 kb on + strand, within Atu0393 at 386.284 kb on - strand, within Atu0393 at 386.333 kb on + strand, within Atu0393 at 386.339 kb on - strand, within Atu0393 at 386.505 kb on - strand, within Atu0393 at 386.676 kb on - strand, within Atu0393 at 386.677 kb on + strand, within Atu0393 at 386.769 kb on + strand, within Atu0393 at 386.815 kb on + strand at 386.858 kb on + strand at 386.866 kb on - strand at 386.888 kb on + strand at 386.955 kb on - strand at 386.957 kb on + strand at 386.965 kb on - strand at 387.092 kb on + strand, within Atu0394 at 387.150 kb on - strand, within Atu0394 at 387.154 kb on + strand, within Atu0394 at 387.225 kb on + strand, within Atu0394 at 387.228 kb on - strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.241 kb on - strand, within Atu0394 at 387.241 kb on - strand, within Atu0394 at 387.279 kb on + strand, within Atu0394 at 387.325 kb on - strand, within Atu0394 at 387.420 kb on + strand, within Atu0394 at 387.428 kb on - strand, within Atu0394 at 387.428 kb on - strand, within Atu0394 at 387.455 kb on + strand, within Atu0394 at 387.455 kb on + strand, within Atu0394 at 387.544 kb on - strand, within Atu0394 at 387.548 kb on + strand, within Atu0394 at 387.579 kb on - strand, within Atu0394 at 387.600 kb on + strand, within Atu0394 at 387.700 kb on - strand, within Atu0394 at 387.703 kb on - strand, within Atu0394 at 387.714 kb on - strand, within Atu0394 at 387.724 kb on + strand, within Atu0394 at 387.724 kb on + strand, within Atu0394 at 387.727 kb on - strand, within Atu0394 at 387.732 kb on - strand, within Atu0394 at 387.741 kb on - strand, within Atu0394 at 387.852 kb on - strand, within Atu0394 at 387.881 kb on - strand, within Atu0394
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 385,108 + +0.5 385,220 + +0.4 385,285 - Atu0392 0.16 -1.4 385,322 - Atu0392 0.20 -0.3 385,396 + Atu0392 0.28 +0.4 385,477 - Atu0392 0.37 +0.1 385,477 - Atu0392 0.37 +0.0 385,565 + Atu0392 0.46 +0.1 385,688 + Atu0392 0.60 +0.0 385,696 - Atu0392 0.60 +0.1 385,703 + Atu0392 0.61 +0.8 385,762 + Atu0392 0.68 -0.1 385,773 - Atu0392 0.69 +0.2 385,825 + Atu0392 0.74 -0.2 385,863 + Atu0392 0.78 +0.2 385,927 + Atu0392 0.85 +0.3 385,934 - Atu0392 0.86 -0.1 386,006 + +0.0 386,014 - +0.1 386,096 + -0.5 386,151 - Atu0393 0.11 +0.4 386,192 + Atu0393 0.16 +0.5 386,284 - Atu0393 0.27 +0.6 386,333 + Atu0393 0.33 +0.6 386,339 - Atu0393 0.34 -0.1 386,505 - Atu0393 0.54 -0.5 386,676 - Atu0393 0.75 +0.4 386,677 + Atu0393 0.75 +0.1 386,769 + Atu0393 0.86 +0.2 386,815 + +0.1 386,858 + +0.1 386,866 - -0.5 386,888 + -0.1 386,955 - -0.1 386,957 + +0.7 386,965 - +0.0 387,092 + Atu0394 0.13 -0.2 387,150 - Atu0394 0.17 -0.0 387,154 + Atu0394 0.18 -0.1 387,225 + Atu0394 0.23 +0.3 387,228 - Atu0394 0.23 -0.3 387,233 + Atu0394 0.24 -0.8 387,233 + Atu0394 0.24 -0.0 387,233 + Atu0394 0.24 -0.4 387,241 - Atu0394 0.24 +2.4 387,241 - Atu0394 0.24 -0.1 387,279 + Atu0394 0.27 +0.3 387,325 - Atu0394 0.31 -0.1 387,420 + Atu0394 0.38 -0.3 387,428 - Atu0394 0.39 -0.1 387,428 - Atu0394 0.39 -0.1 387,455 + Atu0394 0.41 +0.3 387,455 + Atu0394 0.41 +0.9 387,544 - Atu0394 0.48 +1.2 387,548 + Atu0394 0.48 +1.7 387,579 - Atu0394 0.51 +1.0 387,600 + Atu0394 0.52 +0.4 387,700 - Atu0394 0.60 +0.5 387,703 - Atu0394 0.60 -0.4 387,714 - Atu0394 0.61 +0.1 387,724 + Atu0394 0.62 +0.9 387,724 + Atu0394 0.62 -0.9 387,727 - Atu0394 0.62 -0.4 387,732 - Atu0394 0.62 +0.7 387,741 - Atu0394 0.63 -0.3 387,852 - Atu0394 0.72 +0.3 387,881 - Atu0394 0.74 +0.0
Or see this region's nucleotide sequence