Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0291 and Atu0292 are separated by 3 nucleotides Atu0292 and Atu0293 are separated by 300 nucleotides
Atu0291: Atu0291 - hypothetical protein, at 285,781 to 286,653
Atu0291
Atu0292: Atu0292 - iron-sulfur cluster binding protein, at 286,657 to 287,637
Atu0292
Atu0293: Atu0293 - glutathione S-transferase, at 287,938 to 288,630
Atu0293
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1
2 at 285.777 kb on + strand at 285.965 kb on - strand, within Atu0291 at 285.966 kb on + strand, within Atu0291 at 285.970 kb on - strand, within Atu0291 at 285.985 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.004 kb on + strand, within Atu0291 at 286.007 kb on - strand, within Atu0291 at 286.012 kb on - strand, within Atu0291 at 286.144 kb on - strand, within Atu0291 at 286.197 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.229 kb on + strand, within Atu0291 at 286.243 kb on - strand, within Atu0291 at 286.283 kb on + strand, within Atu0291 at 286.373 kb on + strand, within Atu0291 at 286.455 kb on + strand, within Atu0291 at 286.554 kb on - strand, within Atu0291 at 286.561 kb on + strand, within Atu0291 at 286.588 kb on - strand at 286.690 kb on + strand at 286.819 kb on + strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.822 kb on - strand, within Atu0292 at 286.941 kb on + strand, within Atu0292 at 286.983 kb on - strand, within Atu0292 at 287.141 kb on - strand, within Atu0292 at 287.146 kb on - strand, within Atu0292 at 287.204 kb on + strand, within Atu0292 at 287.246 kb on - strand, within Atu0292 at 287.251 kb on - strand, within Atu0292 at 287.281 kb on + strand, within Atu0292 at 287.518 kb on - strand, within Atu0292 at 287.590 kb on - strand at 287.632 kb on + strand at 287.644 kb on + strand at 287.721 kb on + strand at 287.729 kb on - strand at 287.729 kb on - strand at 287.834 kb on + strand at 287.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 285,777 + +0.3 285,965 - Atu0291 0.21 +0.4 285,966 + Atu0291 0.21 -0.4 285,970 - Atu0291 0.22 -0.6 285,985 + Atu0291 0.23 +0.8 286,004 + Atu0291 0.26 +0.2 286,004 + Atu0291 0.26 -0.4 286,004 + Atu0291 0.26 +0.1 286,007 - Atu0291 0.26 -0.0 286,012 - Atu0291 0.26 +0.1 286,144 - Atu0291 0.42 -1.6 286,197 + Atu0291 0.48 -0.1 286,229 + Atu0291 0.51 -0.0 286,229 + Atu0291 0.51 -0.4 286,243 - Atu0291 0.53 +0.4 286,283 + Atu0291 0.58 +0.6 286,373 + Atu0291 0.68 -0.3 286,455 + Atu0291 0.77 -0.7 286,554 - Atu0291 0.89 +0.7 286,561 + Atu0291 0.89 +0.3 286,588 - -0.2 286,690 + +0.1 286,819 + Atu0292 0.17 -0.2 286,822 - Atu0292 0.17 +0.2 286,822 - Atu0292 0.17 +0.5 286,941 + Atu0292 0.29 +0.2 286,983 - Atu0292 0.33 +0.6 287,141 - Atu0292 0.49 +1.0 287,146 - Atu0292 0.50 +1.8 287,204 + Atu0292 0.56 +0.2 287,246 - Atu0292 0.60 +0.1 287,251 - Atu0292 0.61 +0.6 287,281 + Atu0292 0.64 +1.4 287,518 - Atu0292 0.88 +0.8 287,590 - -0.2 287,632 + -0.2 287,644 + -0.2 287,721 + +0.5 287,729 - +0.2 287,729 - -0.2 287,834 + +1.0 287,842 - -0.1
Or see this region's nucleotide sequence