Experiment: Indole-3-butyric 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0210 and Atu0211 are separated by 18 nucleotides Atu0211 and Atu0212 are separated by 95 nucleotides Atu0212 and Atu0213 are separated by 191 nucleotides
Atu0210: Atu0210 - hypothetical protein, at 215,253 to 215,597
Atu0210
Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467
Atu0211
Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922
Atu0212
Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418
Atu0213
Position (kb) 216
217 Strain fitness (log2 ratio) -1
0
1 at 215.620 kb on - strand at 215.640 kb on - strand at 215.650 kb on - strand at 215.652 kb on + strand at 215.655 kb on - strand at 215.677 kb on + strand at 215.685 kb on - strand at 215.685 kb on - strand at 215.720 kb on + strand, within Atu0211 at 215.732 kb on + strand, within Atu0211 at 215.769 kb on + strand, within Atu0211 at 215.781 kb on + strand, within Atu0211 at 215.786 kb on + strand, within Atu0211 at 215.855 kb on - strand, within Atu0211 at 215.918 kb on - strand, within Atu0211 at 215.918 kb on - strand, within Atu0211 at 215.936 kb on + strand, within Atu0211 at 215.944 kb on - strand, within Atu0211 at 215.989 kb on - strand, within Atu0211 at 215.990 kb on - strand, within Atu0211 at 216.039 kb on - strand, within Atu0211 at 216.062 kb on + strand, within Atu0211 at 216.157 kb on - strand, within Atu0211 at 216.236 kb on - strand, within Atu0211 at 216.497 kb on - strand at 216.515 kb on + strand at 216.533 kb on - strand at 216.533 kb on - strand at 216.608 kb on + strand, within Atu0212 at 216.718 kb on + strand, within Atu0212 at 216.776 kb on - strand, within Atu0212 at 216.806 kb on - strand, within Atu0212 at 216.812 kb on + strand, within Atu0212 at 216.883 kb on + strand, within Atu0212 at 216.995 kb on + strand at 217.003 kb on - strand at 217.013 kb on - strand at 217.049 kb on - strand at 217.104 kb on - strand at 217.154 kb on - strand at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.283 kb on - strand, within Atu0213 at 217.283 kb on - strand, within Atu0213 at 217.310 kb on + strand, within Atu0213 at 217.310 kb on + strand, within Atu0213 at 217.346 kb on + strand, within Atu0213 at 217.431 kb on + strand, within Atu0213 at 217.468 kb on - strand, within Atu0213 at 217.608 kb on + strand, within Atu0213 at 217.641 kb on - strand, within Atu0213 at 217.641 kb on - strand, within Atu0213 at 217.768 kb on + strand, within Atu0213 at 217.776 kb on - strand, within Atu0213 at 217.789 kb on + strand, within Atu0213 at 217.834 kb on - strand, within Atu0213
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM remove 215,620 - -0.1 215,640 - -0.1 215,650 - +0.2 215,652 + -0.6 215,655 - -0.2 215,677 + -0.2 215,685 - -0.0 215,685 - -0.8 215,720 + Atu0211 0.12 -0.5 215,732 + Atu0211 0.14 +0.3 215,769 + Atu0211 0.18 -0.2 215,781 + Atu0211 0.19 +0.1 215,786 + Atu0211 0.20 +0.1 215,855 - Atu0211 0.28 -0.4 215,918 - Atu0211 0.35 +0.0 215,918 - Atu0211 0.35 -1.5 215,936 + Atu0211 0.38 +0.5 215,944 - Atu0211 0.38 -0.4 215,989 - Atu0211 0.44 -0.1 215,990 - Atu0211 0.44 +0.2 216,039 - Atu0211 0.50 -1.7 216,062 + Atu0211 0.52 -0.1 216,157 - Atu0211 0.63 -0.2 216,236 - Atu0211 0.73 -1.2 216,497 - -0.1 216,515 + +0.4 216,533 - +0.0 216,533 - -0.0 216,608 + Atu0212 0.12 +0.5 216,718 + Atu0212 0.43 +0.3 216,776 - Atu0212 0.59 +0.4 216,806 - Atu0212 0.68 +0.3 216,812 + Atu0212 0.69 +0.6 216,883 + Atu0212 0.89 +0.1 216,995 + +1.0 217,003 - -0.3 217,013 - +0.2 217,049 - +0.4 217,104 - +0.3 217,154 - -0.3 217,275 + Atu0213 0.12 +0.2 217,275 + Atu0213 0.12 +0.2 217,275 + Atu0213 0.12 +1.1 217,275 + Atu0213 0.12 +0.5 217,283 - Atu0213 0.13 +0.2 217,283 - Atu0213 0.13 -0.3 217,310 + Atu0213 0.15 -0.2 217,310 + Atu0213 0.15 +0.1 217,346 + Atu0213 0.18 -0.4 217,431 + Atu0213 0.24 +0.0 217,468 - Atu0213 0.27 +0.7 217,608 + Atu0213 0.38 -0.1 217,641 - Atu0213 0.40 -0.6 217,641 - Atu0213 0.40 -0.9 217,768 + Atu0213 0.50 +0.5 217,776 - Atu0213 0.51 +0.4 217,789 + Atu0213 0.52 -0.5 217,834 - Atu0213 0.55 -0.6
Or see this region's nucleotide sequence