Strain Fitness in Agrobacterium fabrum C58 around Atu0206

Experiment: Indole-3-butyric 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0205 and Atu0206 are separated by 111 nucleotidesAtu0206 and Atu0207 overlap by 4 nucleotides Atu0205: Atu0205 - methylmalonate-semialdehyde dehydrogenase, at 209,585 to 211,141 Atu0205 Atu0206: Atu0206 - hypothetical protein, at 211,253 to 211,570 Atu0206 Atu0207: Atu0207 - transcriptional regulator, LysR family, at 211,567 to 212,448 Atu0207 Position (kb) 211 212Strain fitness (log2 ratio) -1 0 1at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.265 kb on - strand, within Atu0205at 210.292 kb on + strand, within Atu0205at 210.385 kb on - strand, within Atu0205at 210.405 kb on + strand, within Atu0205at 210.453 kb on - strand, within Atu0205at 210.480 kb on + strand, within Atu0205at 210.569 kb on - strand, within Atu0205at 210.587 kb on + strand, within Atu0205at 210.595 kb on - strand, within Atu0205at 210.632 kb on - strand, within Atu0205at 210.648 kb on - strand, within Atu0205at 210.713 kb on + strand, within Atu0205at 210.728 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.791 kb on - strand, within Atu0205at 210.809 kb on - strand, within Atu0205at 210.837 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.866 kb on - strand, within Atu0205at 211.082 kb on + strandat 211.189 kb on + strandat 211.306 kb on - strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.539 kb on - strandat 211.581 kb on + strandat 211.612 kb on + strandat 211.642 kb on + strandat 211.646 kb on - strandat 211.647 kb on + strandat 211.650 kb on - strandat 211.680 kb on + strand, within Atu0207at 211.736 kb on + strand, within Atu0207at 211.771 kb on - strand, within Atu0207at 211.817 kb on - strand, within Atu0207at 211.826 kb on - strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.843 kb on - strand, within Atu0207at 211.902 kb on + strand, within Atu0207at 211.911 kb on + strand, within Atu0207at 211.919 kb on - strand, within Atu0207at 211.953 kb on + strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.961 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.013 kb on + strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.021 kb on - strand, within Atu0207at 212.064 kb on - strand, within Atu0207at 212.169 kb on + strand, within Atu0207at 212.177 kb on - strand, within Atu0207at 212.184 kb on + strand, within Atu0207at 212.187 kb on - strand, within Atu0207at 212.262 kb on + strand, within Atu0207at 212.350 kb on - strand, within Atu0207at 212.418 kb on + strandat 212.445 kb on - strandat 212.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-butyric 5 mM
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210,265 - Atu0205 0.44 +0.1
210,265 - Atu0205 0.44 +0.1
210,265 - Atu0205 0.44 -1.1
210,292 + Atu0205 0.45 +0.1
210,385 - Atu0205 0.51 +0.6
210,405 + Atu0205 0.53 +0.4
210,453 - Atu0205 0.56 -0.4
210,480 + Atu0205 0.57 +0.1
210,569 - Atu0205 0.63 -0.2
210,587 + Atu0205 0.64 -0.7
210,595 - Atu0205 0.65 +0.3
210,632 - Atu0205 0.67 +0.4
210,648 - Atu0205 0.68 +0.4
210,713 + Atu0205 0.72 -0.2
210,728 - Atu0205 0.73 -0.1
210,768 - Atu0205 0.76 -0.0
210,768 - Atu0205 0.76 -0.2
210,791 - Atu0205 0.77 +0.4
210,809 - Atu0205 0.79 -0.4
210,837 - Atu0205 0.80 -0.7
210,859 - Atu0205 0.82 -0.1
210,859 - Atu0205 0.82 -0.3
210,866 - Atu0205 0.82 +0.5
211,082 + +0.5
211,189 + -0.0
211,306 - Atu0206 0.17 +1.3
211,397 + Atu0206 0.45 -0.1
211,397 + Atu0206 0.45 +0.2
211,539 - -0.0
211,581 + +0.1
211,612 + +0.8
211,642 + +0.6
211,646 - +0.9
211,647 + -0.6
211,650 - +0.1
211,680 + Atu0207 0.13 +0.3
211,736 + Atu0207 0.19 -0.8
211,771 - Atu0207 0.23 -0.1
211,817 - Atu0207 0.28 +0.2
211,826 - Atu0207 0.29 +0.4
211,833 + Atu0207 0.30 +0.9
211,833 + Atu0207 0.30 +0.0
211,843 - Atu0207 0.31 -0.2
211,902 + Atu0207 0.38 -0.1
211,911 + Atu0207 0.39 -0.1
211,919 - Atu0207 0.40 -0.0
211,953 + Atu0207 0.44 +0.0
211,956 - Atu0207 0.44 -0.5
211,956 - Atu0207 0.44 +0.1
211,961 + Atu0207 0.45 +0.1
212,008 + Atu0207 0.50 +0.1
212,008 + Atu0207 0.50 +0.0
212,013 + Atu0207 0.51 -0.3
212,016 - Atu0207 0.51 -0.8
212,016 - Atu0207 0.51 +0.1
212,016 - Atu0207 0.51 +0.1
212,016 - Atu0207 0.51 -0.2
212,021 - Atu0207 0.51 +0.6
212,064 - Atu0207 0.56 +0.8
212,169 + Atu0207 0.68 +0.0
212,177 - Atu0207 0.69 -0.1
212,184 + Atu0207 0.70 +0.2
212,187 - Atu0207 0.70 +0.0
212,262 + Atu0207 0.79 +0.0
212,350 - Atu0207 0.89 -0.2
212,418 + -0.5
212,445 - +0.1
212,513 + +0.3

Or see this region's nucleotide sequence