Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3920 and PP_t61 are separated by 101 nucleotides PP_t61 and PP_3922 are separated by 154 nucleotides
PP_3920: PP_3920 - putative Phage integrase, at 4,426,367 to 4,427,416
_3920
PP_t61: PP_t61 - tRNA-Cys, at 4,427,518 to 4,427,591
_t61
PP_3922: PP_3922 - putative inner membrane peptidase, at 4,427,746 to 4,428,765
_3922
Position (kb) 4427
4428 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4426.592 kb on + strand, within PP_3920 at 4426.592 kb on + strand, within PP_3920 at 4426.593 kb on - strand, within PP_3920 at 4426.647 kb on - strand, within PP_3920 at 4426.721 kb on + strand, within PP_3920 at 4426.760 kb on + strand, within PP_3920 at 4426.783 kb on - strand, within PP_3920 at 4426.783 kb on - strand, within PP_3920 at 4426.783 kb on - strand, within PP_3920 at 4426.783 kb on - strand, within PP_3920 at 4426.810 kb on + strand, within PP_3920 at 4426.810 kb on + strand, within PP_3920 at 4426.811 kb on - strand, within PP_3920 at 4426.901 kb on + strand, within PP_3920 at 4426.902 kb on - strand, within PP_3920 at 4426.902 kb on - strand, within PP_3920 at 4426.946 kb on + strand, within PP_3920 at 4426.946 kb on + strand, within PP_3920 at 4426.946 kb on + strand, within PP_3920 at 4426.975 kb on - strand, within PP_3920 at 4426.975 kb on - strand, within PP_3920 at 4426.975 kb on - strand, within PP_3920 at 4427.009 kb on + strand, within PP_3920 at 4427.010 kb on - strand, within PP_3920 at 4427.058 kb on + strand, within PP_3920 at 4427.059 kb on - strand, within PP_3920 at 4427.073 kb on + strand, within PP_3920 at 4427.073 kb on + strand, within PP_3920 at 4427.130 kb on + strand, within PP_3920 at 4427.131 kb on - strand, within PP_3920 at 4427.131 kb on - strand, within PP_3920 at 4427.441 kb on + strand at 4427.625 kb on - strand at 4427.800 kb on - strand at 4427.820 kb on + strand at 4427.820 kb on + strand at 4427.821 kb on - strand at 4427.849 kb on + strand, within PP_3922 at 4427.849 kb on + strand, within PP_3922 at 4427.894 kb on + strand, within PP_3922 at 4427.895 kb on - strand, within PP_3922 at 4428.053 kb on + strand, within PP_3922 at 4428.053 kb on + strand, within PP_3922 at 4428.054 kb on - strand, within PP_3922 at 4428.107 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.192 kb on + strand, within PP_3922 at 4428.193 kb on - strand, within PP_3922 at 4428.193 kb on - strand, within PP_3922 at 4428.193 kb on - strand, within PP_3922 at 4428.193 kb on - strand, within PP_3922 at 4428.251 kb on + strand, within PP_3922 at 4428.251 kb on + strand, within PP_3922 at 4428.252 kb on - strand, within PP_3922 at 4428.341 kb on + strand, within PP_3922 at 4428.341 kb on + strand, within PP_3922 at 4428.478 kb on + strand, within PP_3922
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 4,426,592 + PP_3920 0.21 -2.0 4,426,592 + PP_3920 0.21 -0.8 4,426,593 - PP_3920 0.22 +0.2 4,426,647 - PP_3920 0.27 -1.0 4,426,721 + PP_3920 0.34 -0.6 4,426,760 + PP_3920 0.37 -0.7 4,426,783 - PP_3920 0.40 +0.4 4,426,783 - PP_3920 0.40 +1.3 4,426,783 - PP_3920 0.40 +1.9 4,426,783 - PP_3920 0.40 +1.4 4,426,810 + PP_3920 0.42 -1.4 4,426,810 + PP_3920 0.42 -1.6 4,426,811 - PP_3920 0.42 +1.8 4,426,901 + PP_3920 0.51 -0.6 4,426,902 - PP_3920 0.51 -1.9 4,426,902 - PP_3920 0.51 +0.6 4,426,946 + PP_3920 0.55 +1.2 4,426,946 + PP_3920 0.55 -0.2 4,426,946 + PP_3920 0.55 -0.6 4,426,975 - PP_3920 0.58 +1.4 4,426,975 - PP_3920 0.58 -0.6 4,426,975 - PP_3920 0.58 +0.3 4,427,009 + PP_3920 0.61 -0.0 4,427,010 - PP_3920 0.61 +0.4 4,427,058 + PP_3920 0.66 +3.4 4,427,059 - PP_3920 0.66 +0.4 4,427,073 + PP_3920 0.67 -4.9 4,427,073 + PP_3920 0.67 -2.4 4,427,130 + PP_3920 0.73 -0.1 4,427,131 - PP_3920 0.73 +0.4 4,427,131 - PP_3920 0.73 -0.6 4,427,441 + +0.4 4,427,625 - +0.4 4,427,800 - +0.4 4,427,820 + +0.4 4,427,820 + -1.4 4,427,821 - -1.6 4,427,849 + PP_3922 0.10 +0.4 4,427,849 + PP_3922 0.10 +1.8 4,427,894 + PP_3922 0.15 +0.4 4,427,895 - PP_3922 0.15 -0.4 4,428,053 + PP_3922 0.30 +2.7 4,428,053 + PP_3922 0.30 -2.9 4,428,054 - PP_3922 0.30 -1.9 4,428,107 + PP_3922 0.35 +1.4 4,428,192 + PP_3922 0.44 +1.0 4,428,192 + PP_3922 0.44 -0.2 4,428,192 + PP_3922 0.44 +0.4 4,428,192 + PP_3922 0.44 -2.6 4,428,192 + PP_3922 0.44 -0.8 4,428,192 + PP_3922 0.44 -1.9 4,428,192 + PP_3922 0.44 +1.8 4,428,193 - PP_3922 0.44 +1.3 4,428,193 - PP_3922 0.44 +0.9 4,428,193 - PP_3922 0.44 -0.2 4,428,193 - PP_3922 0.44 +1.0 4,428,251 + PP_3922 0.50 -1.1 4,428,251 + PP_3922 0.50 -0.5 4,428,252 - PP_3922 0.50 +0.4 4,428,341 + PP_3922 0.58 +0.8 4,428,341 + PP_3922 0.58 +0.4 4,428,478 + PP_3922 0.72 +1.1
Or see this region's nucleotide sequence