Strain Fitness in Pseudomonas putida KT2440 around PP_5558

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,449,345	+		PP_3067	0.42	+1.3
3,449,384	+		PP_3067	0.45	+0.1
3,449,612	-		PP_3067	0.63	-0.9
3,449,811	-		PP_3067	0.79	-0.8
3,449,846	+		PP_3067	0.82	+0.3
3,449,847	-		PP_3067	0.82	+0.7
3,449,847	-		PP_3067	0.82	-0.4
3,449,847	-		PP_3067	0.82	-3.6
3,449,852	+		PP_3067	0.82	+0.0
3,449,852	+		PP_3067	0.82	+1.1
3,449,853	-		PP_3067	0.82	-0.6
3,449,853	-		PP_3067	0.82	+0.3
3,449,855	-		PP_3067	0.82	-1.7
3,449,892	-		PP_3067	0.85	-1.7
3,449,899	-		PP_3067	0.86	+0.8
3,449,913	-		PP_3067	0.87	+4.5
3,449,934	-		PP_3067	0.88	-1.8
3,449,954	-				-0.8
3,449,966	+				+0.3
3,450,016	-				-1.5
3,450,130	+				-1.7
3,450,131	-				+0.3
3,450,137	+				+1.4
3,450,137	+				-1.0
3,450,138	-				-3.1
3,450,265	+		PP_5558	0.12	+1.4
3,450,265	+		PP_5558	0.12	+1.4
3,450,438	-		PP_5558	0.59	-4.0
3,450,438	-		PP_5558	0.59	+0.1
3,450,438	-				-0.7
3,450,562	+				+2.3
3,450,562	+				+1.2
3,450,562	+				-3.5
3,450,563	-				+0.3
3,450,563	-				+0.8
3,450,597	-				-3.6
3,450,602	-				+1.6
3,450,615	-				+0.8
3,450,633	+				+0.7
3,450,642	+				+0.3
3,450,642	+				-1.5
3,450,642	+				+3.8
3,450,642	+				-1.7
3,450,642	+				+0.3
3,450,643	-				+0.0
3,450,663	-				+0.3
3,450,681	-				+2.4
3,450,847	+				-1.4
3,450,847	+				+0.8
3,450,848	-				+0.3
3,450,865	+				+0.3
3,450,865	+				+1.9
3,450,866	-				+1.8
3,450,866	-				+0.5
3,451,040	-				+0.2
3,451,040	-				+0.1
3,451,040	-				+0.9
3,451,084	-				+0.2
3,451,084	-				+1.1
3,451,112	+				-2.8
3,451,112	+				+3.2
3,451,112	+				-1.1
3,451,113	-				-0.8
3,451,483	+		PP_3069	0.21	+0.5
3,451,484	-		PP_3069	0.21	-0.1
3,451,504	+		PP_3069	0.22	+0.4
3,451,535	-		PP_3069	0.23	+1.0
3,451,547	+		PP_3069	0.23	-0.4