Strain Fitness in Pseudomonas putida KT2440 around PP_5543

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,357,624	+		PP_2953	0.67	+0.2
3,357,772	+		PP_2953	0.81	+2.1
3,357,849	+		PP_2953	0.89	-2.0
3,357,849	+		PP_2953	0.89	+0.5
3,357,850	-		PP_2953	0.89	+2.7
3,358,058	+				+1.8
3,358,132	+		PP_2954	0.15	-0.6
3,358,133	-		PP_2954	0.15	-0.4
3,358,133	-		PP_2954	0.15	-2.6
3,358,133	-		PP_2954	0.15	-0.3
3,358,264	+		PP_2954	0.49	-1.6
3,358,264	+		PP_2954	0.49	+1.2
3,358,264	+		PP_2954	0.49	+0.4
3,358,264	+		PP_2954	0.49	+0.4
3,358,265	-		PP_2954	0.49	-0.6
3,358,265	-		PP_2954	0.49	+0.1
3,358,304	-		PP_2954	0.59	+0.5
3,358,499	+				+1.5
3,358,500	-				-0.7
3,358,500	-				+0.3
3,358,500	-				-1.1
3,358,653	-				-1.1
3,358,666	+		PP_5543	0.66	+0.4
3,358,666	+		PP_5543	0.66	+1.1
3,358,666	+		PP_5543	0.66	+1.6
3,358,687	+		PP_5543	0.81	+1.5
3,358,687	+		PP_5543	0.81	-1.2
3,358,688	-		PP_5543	0.81	+0.8
3,358,688	-		PP_5543	0.81	+4.1
3,358,691	+		PP_5543	0.83	-4.9
3,358,753	-				-1.3
3,358,753	-				-2.1
3,358,753	-				-0.4
3,358,779	+				+0.7
3,358,779	+				-2.3
3,358,813	+				-0.6
3,359,010	+		PP_2955	0.26	-0.2
3,359,043	-		PP_2955	0.30	-0.9
3,359,043	-		PP_2955	0.30	-1.6
3,359,168	+		PP_2955	0.44	+0.6
3,359,168	+		PP_2955	0.44	+0.3
3,359,171	+		PP_2955	0.44	+0.8
3,359,187	+		PP_2955	0.46	+0.4
3,359,195	+		PP_2955	0.46	+0.7
3,359,195	+		PP_2955	0.46	-0.7
3,359,196	-		PP_2955	0.47	+0.4
3,359,266	+		PP_2955	0.54	-0.0
3,359,288	+		PP_2955	0.57	+0.8
3,359,288	+		PP_2955	0.57	+1.2
3,359,338	-		PP_2955	0.62	-0.6
3,359,338	-		PP_2955	0.62	-2.8
3,359,359	+		PP_2955	0.64	+3.7
3,359,417	-		PP_2955	0.71	-0.3
3,359,669	+				-1.1
3,359,673	-				-0.1
3,359,709	+				+0.4
3,359,710	-				+0.6