Strain Fitness in Pseudomonas putida KT2440 around PP_5209

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,941,085	+		PP_5208	0.83	-3.6
5,941,186	+				+0.9
5,941,187	-				+2.0
5,941,187	-				-0.2
5,941,374	+				+2.6
5,941,374	+				-0.5
5,941,374	+				-1.9
5,941,374	+				-0.4
5,941,375	-				-1.1
5,941,375	-				+0.0
5,941,375	-				+1.0
5,941,376	+				+0.4
5,941,376	+				-0.6
5,941,377	-				-0.8
5,941,377	-				-3.1
5,941,377	-				+0.4
5,941,392	+				+0.4
5,941,425	+				+0.8
5,941,425	+				-3.5
5,941,426	-				+1.4
5,941,426	-				-1.5
5,941,426	-				+2.2
5,941,426	-				+4.2
5,941,426	-				+1.5
5,941,426	-				-0.3
5,941,426	-				-2.0
5,941,453	+				-0.3
5,941,470	-				+0.4
5,941,565	+		PP_5722	0.25	+2.1
5,941,565	+		PP_5722	0.25	-0.6
5,941,566	-		PP_5722	0.26	-0.1
5,941,566	-		PP_5722	0.26	-0.9
5,941,576	+		PP_5722	0.28	+2.7
5,941,576	+		PP_5722	0.28	+1.2
5,941,576	+		PP_5722	0.28	-2.9
5,941,577	-		PP_5722	0.28	-0.6
5,941,577	-		PP_5722	0.28	-1.6
5,941,631	+		PP_5722	0.40	-0.8
5,941,632	-		PP_5722	0.41	-3.1
5,941,642	+		PP_5722	0.43	+0.7
5,941,643	-		PP_5722	0.43	+0.6
5,941,690	+		PP_5722	0.54	-1.6
5,941,690	+		PP_5722	0.54	+0.7
5,941,690	+		PP_5722	0.54	-1.0
5,941,691	-		PP_5722	0.54	+0.1
5,941,691	-		PP_5722	0.54	-0.6
5,941,739	+		PP_5722	0.65	-0.5
5,941,752	+		PP_5722	0.68	+0.7
5,941,761	+		PP_5722	0.70	+1.1
5,941,761	+		PP_5722	0.70	+2.2
5,941,761	+		PP_5722	0.70	+2.5
5,941,762	-		PP_5722	0.71	-0.3
5,941,855	-				-0.6
5,941,855	-				+0.8
5,941,855	-				+0.4
5,941,928	+				+0.4
5,941,928	+				+3.3
5,941,928	+				+0.4
5,941,929	-				+0.9
5,941,929	-				-0.6
5,941,929	-				+0.4
5,941,929	-				-2.3
5,941,969	-				+0.4
5,941,990	+				+0.4
5,941,990	+				+0.1
5,941,990	+				-1.0
5,941,990	+				+1.1
5,941,991	-				-0.6
5,941,991	-				+0.2
5,941,991	-				+3.8
5,942,002	-				+0.4
5,942,024	-				+1.3
5,942,024	-				-1.9
5,942,024	-				-0.7
5,942,249	-		PP_5209	0.42	+0.4
5,942,249	-		PP_5209	0.42	-3.9
5,942,249	-		PP_5209	0.42	-3.2
5,942,249	-		PP_5209	0.42	-2.2
5,942,301	-		PP_5209	0.54	-0.4
5,942,301	-		PP_5209	0.54	+0.8
5,942,333	+		PP_5209	0.61	-2.8
5,942,333	+		PP_5209	0.61	-1.8
5,942,333	+		PP_5209	0.61	+1.6
5,942,333	+		PP_5209	0.61	-1.6
5,942,334	-		PP_5209	0.61	-1.4
5,942,367	-		PP_5209	0.68	-0.0
5,942,367	-		PP_5209	0.68	+2.2
5,942,367	-		PP_5209	0.68	-2.1
5,942,473	+				-0.7
5,942,473	+				+1.0
5,942,474	-				-2.1
5,942,490	+				+1.0
5,942,490	+				-2.6
5,942,490	+				-0.7
5,942,491	-				-0.4
5,942,577	+				-3.9
5,942,578	-				-2.6
5,942,578	-				+0.4
5,942,578	-				+2.0
5,942,583	+				+0.4
5,942,608	-				-0.0
5,942,765	+		PP_5210	0.15	+0.8
5,942,765	+		PP_5210	0.15	-1.6
5,942,766	-		PP_5210	0.15	-2.1
5,942,766	-		PP_5210	0.15	+4.2
5,942,921	+		PP_5210	0.31	-1.2
5,942,921	+		PP_5210	0.31	+1.1
5,942,921	+		PP_5210	0.31	+2.1
5,942,921	+		PP_5210	0.31	-3.7
5,942,922	-		PP_5210	0.31	+2.4
5,942,922	-		PP_5210	0.31	-1.0
5,942,984	+		PP_5210	0.38	-0.2
5,942,984	+		PP_5210	0.38	+1.4
5,942,984	+		PP_5210	0.38	-2.2
5,942,985	-		PP_5210	0.38	-1.6
5,943,048	+		PP_5210	0.44	-2.4
5,943,185	+		PP_5210	0.58	-0.9
5,943,186	-		PP_5210	0.58	+0.4
5,943,251	+		PP_5210	0.65	+0.2
5,943,251	+		PP_5210	0.65	-0.5
5,943,251	+		PP_5210	0.65	+2.0
5,943,251	+		PP_5210	0.65	-3.5
5,943,251	+		PP_5210	0.65	-1.0
5,943,252	-		PP_5210	0.65	+3.0
5,943,252	-		PP_5210	0.65	+5.1
5,943,252	-		PP_5210	0.65	+0.1
5,943,252	-		PP_5210	0.65	-0.6
5,943,252	-		PP_5210	0.65	+2.0
5,943,252	-		PP_5210	0.65	-2.4
5,943,252	-		PP_5210	0.65	+0.5
5,943,509	+				-0.0
5,943,509	+				+1.0
5,943,510	-				+0.5
5,943,510	-				-0.0