Strain Fitness in Pseudomonas putida KT2440 around PP_5176

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5175 and PP_5176 are separated by 267 nucleotidesPP_5176 and PP_5177 are separated by 106 nucleotidesPP_5177 and PP_5178 overlap by 4 nucleotides PP_5175: PP_5175 - HlyD family secretion protein, at 5,901,948 to 5,903,036 _5175 PP_5176: PP_5176 - conserved protein of unknown function, at 5,903,304 to 5,903,744 _5176 PP_5177: PP_5177 - spermidine/putrescine ABC transporter - permease subunit, at 5,903,851 to 5,904,744 _5177 PP_5178: PP_5178 - spermidine/putrescine ABC transporter - inner membrane subunit, at 5,904,741 to 5,905,661 _5178 Position (kb) 5903 5904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5902.320 kb on + strand, within PP_5175at 5902.320 kb on + strand, within PP_5175at 5902.368 kb on + strand, within PP_5175at 5902.408 kb on + strand, within PP_5175at 5902.408 kb on + strand, within PP_5175at 5902.409 kb on - strand, within PP_5175at 5902.540 kb on + strand, within PP_5175at 5902.630 kb on + strand, within PP_5175at 5902.630 kb on + strand, within PP_5175at 5902.630 kb on + strand, within PP_5175at 5902.631 kb on - strand, within PP_5175at 5902.631 kb on - strand, within PP_5175at 5902.631 kb on - strand, within PP_5175at 5902.722 kb on + strand, within PP_5175at 5902.722 kb on + strand, within PP_5175at 5902.924 kb on - strand, within PP_5175at 5902.973 kb on + strandat 5902.973 kb on + strandat 5902.974 kb on - strandat 5902.990 kb on + strandat 5902.990 kb on + strandat 5902.990 kb on + strandat 5902.991 kb on - strandat 5902.991 kb on - strandat 5902.991 kb on - strandat 5902.991 kb on - strandat 5902.991 kb on - strandat 5902.991 kb on - strandat 5903.087 kb on + strandat 5903.088 kb on - strandat 5903.088 kb on - strandat 5903.088 kb on - strandat 5903.103 kb on - strandat 5903.193 kb on + strandat 5903.193 kb on + strandat 5903.193 kb on + strandat 5903.194 kb on - strandat 5903.194 kb on - strandat 5903.194 kb on - strandat 5903.194 kb on - strandat 5903.194 kb on - strandat 5903.194 kb on - strandat 5903.199 kb on + strandat 5903.200 kb on - strandat 5903.252 kb on - strandat 5903.350 kb on + strand, within PP_5176at 5903.474 kb on - strand, within PP_5176at 5903.656 kb on + strand, within PP_5176at 5903.657 kb on - strand, within PP_5176at 5903.705 kb on + strandat 5903.705 kb on + strandat 5903.706 kb on - strandat 5903.706 kb on - strandat 5903.976 kb on - strand, within PP_5177at 5904.122 kb on - strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.299 kb on + strand, within PP_5177at 5904.300 kb on - strand, within PP_5177at 5904.300 kb on - strand, within PP_5177at 5904.318 kb on + strand, within PP_5177at 5904.318 kb on + strand, within PP_5177at 5904.318 kb on + strand, within PP_5177at 5904.318 kb on + strand, within PP_5177at 5904.318 kb on + strand, within PP_5177at 5904.319 kb on - strand, within PP_5177at 5904.319 kb on - strand, within PP_5177at 5904.342 kb on + strand, within PP_5177at 5904.539 kb on + strand, within PP_5177at 5904.605 kb on + strand, within PP_5177at 5904.606 kb on - strand, within PP_5177at 5904.662 kb on + strandat 5904.663 kb on - strandat 5904.663 kb on - strandat 5904.689 kb on + strandat 5904.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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5,902,320 + PP_5175 0.34 -0.2
5,902,320 + PP_5175 0.34 -0.4
5,902,368 + PP_5175 0.39 +0.7
5,902,408 + PP_5175 0.42 -0.2
5,902,408 + PP_5175 0.42 +0.4
5,902,409 - PP_5175 0.42 +0.4
5,902,540 + PP_5175 0.54 +0.0
5,902,630 + PP_5175 0.63 +1.0
5,902,630 + PP_5175 0.63 +1.8
5,902,630 + PP_5175 0.63 -0.1
5,902,631 - PP_5175 0.63 +0.7
5,902,631 - PP_5175 0.63 -0.1
5,902,631 - PP_5175 0.63 +1.9
5,902,722 + PP_5175 0.71 +1.0
5,902,722 + PP_5175 0.71 +1.0
5,902,924 - PP_5175 0.90 -1.6
5,902,973 + -0.1
5,902,973 + -0.0
5,902,974 - +0.2
5,902,990 + -3.4
5,902,990 + -0.6
5,902,990 + -1.7
5,902,991 - -0.0
5,902,991 - +0.3
5,902,991 - +0.1
5,902,991 - +1.1
5,902,991 - -3.1
5,902,991 - -1.3
5,903,087 + +0.2
5,903,088 - +1.4
5,903,088 - -1.5
5,903,088 - -1.3
5,903,103 - -3.6
5,903,193 + -0.7
5,903,193 + +0.5
5,903,193 + -0.1
5,903,194 - -0.4
5,903,194 - +0.1
5,903,194 - +0.4
5,903,194 - +0.4
5,903,194 - -0.8
5,903,194 - -1.4
5,903,199 + +0.9
5,903,200 - -0.6
5,903,252 - -2.0
5,903,350 + PP_5176 0.10 -0.4
5,903,474 - PP_5176 0.39 -2.0
5,903,656 + PP_5176 0.80 -4.3
5,903,657 - PP_5176 0.80 -3.4
5,903,705 + -2.2
5,903,705 + -1.0
5,903,706 - -0.7
5,903,706 - +1.9
5,903,976 - PP_5177 0.14 -2.0
5,904,122 - PP_5177 0.30 -3.1
5,904,299 + PP_5177 0.50 +0.0
5,904,299 + PP_5177 0.50 -1.6
5,904,299 + PP_5177 0.50 -0.6
5,904,299 + PP_5177 0.50 +1.0
5,904,299 + PP_5177 0.50 +2.0
5,904,299 + PP_5177 0.50 -2.4
5,904,300 - PP_5177 0.50 -2.2
5,904,300 - PP_5177 0.50 -0.4
5,904,318 + PP_5177 0.52 -0.2
5,904,318 + PP_5177 0.52 -0.9
5,904,318 + PP_5177 0.52 -0.0
5,904,318 + PP_5177 0.52 +0.0
5,904,318 + PP_5177 0.52 -3.5
5,904,319 - PP_5177 0.52 -2.0
5,904,319 - PP_5177 0.52 -2.4
5,904,342 + PP_5177 0.55 -0.6
5,904,539 + PP_5177 0.77 +0.4
5,904,605 + PP_5177 0.84 +0.4
5,904,606 - PP_5177 0.84 +0.4
5,904,662 + +0.9
5,904,663 - +3.7
5,904,663 - -0.4
5,904,689 + -0.9
5,904,690 - +0.5

Or see this region's nucleotide sequence