Strain Fitness in Pseudomonas putida KT2440 around PP_5144

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,868,726	-		PP_5143	0.19	-4.3
5,868,732	-		PP_5143	0.19	-0.2
5,868,732	-		PP_5143	0.19	+1.3
5,868,732	-		PP_5143	0.19	-0.1
5,869,347	-				+1.1
5,869,347	-				+0.1
5,869,347	-				+2.5
5,869,375	-				-0.1
5,869,395	-				+0.4
5,869,419	-				+0.6
5,869,492	+				+0.4
5,869,492	+				-2.0
5,869,492	+				+0.4
5,869,492	+				-0.6
5,869,492	+				-0.3
5,869,493	-				+0.5
5,869,493	-				-0.3
5,869,493	-				+3.4
5,869,493	-				+0.2
5,869,493	-				+1.4
5,869,493	-				-1.8
5,869,493	-				-0.4
5,869,493	-				+0.7
5,869,507	-				+0.4
5,869,569	-		PP_5144	0.10	-3.6
5,869,784	+		PP_5144	0.39	+0.4
5,869,784	+		PP_5144	0.39	+0.8
5,869,785	-		PP_5144	0.39	+0.4
5,869,817	+		PP_5144	0.43	+1.4
5,869,818	-		PP_5144	0.44	-3.0
5,869,863	-		PP_5144	0.50	+4.2
5,869,936	+		PP_5144	0.59	+1.9
5,869,936	+		PP_5144	0.59	+0.4
5,870,123	+		PP_5144	0.84	+2.5
5,870,241	+				+0.0
5,870,288	-				+1.7
5,870,288	-				-0.9
5,870,288	-				+1.9
5,870,319	+				+0.8
5,870,319	+				+0.4
5,870,319	+				+1.5
5,870,319	+				-0.3
5,870,320	-				-0.5
5,870,320	-				+0.4
5,870,320	-				+1.1
5,870,326	+				-0.3
5,870,327	-				-0.7
5,870,385	-				-2.0
5,870,385	-				+3.8
5,870,387	+				-2.3
5,870,388	-				-0.2
5,870,511	-				+0.7
5,870,511	-				+1.1
5,870,708	-		PP_5145	0.15	+0.7
5,870,708	-		PP_5145	0.15	+1.6
5,870,708	-		PP_5145	0.15	+0.9
5,870,714	-		PP_5145	0.15	+0.4
5,870,714	-		PP_5145	0.15	+0.7
5,870,714	-		PP_5145	0.15	+0.4
5,870,758	+		PP_5145	0.17	+0.7
5,870,782	-		PP_5145	0.18	+1.1
5,870,824	+		PP_5145	0.20	+0.6
5,870,871	+		PP_5145	0.22	+0.6
5,870,872	-		PP_5145	0.22	+0.8
5,870,872	-		PP_5145	0.22	+0.5
5,870,880	-		PP_5145	0.22	+0.5
5,871,019	-		PP_5145	0.28	+0.5
5,871,100	+		PP_5145	0.32	+0.3
5,871,100	+		PP_5145	0.32	+1.1
5,871,100	+		PP_5145	0.32	+0.8
5,871,101	-		PP_5145	0.32	+0.1
5,871,101	-		PP_5145	0.32	+0.6
5,871,101	-		PP_5145	0.32	+0.5
5,871,181	+		PP_5145	0.35	+0.7
5,871,181	+		PP_5145	0.35	+0.6
5,871,181	+		PP_5145	0.35	+0.7
5,871,181	+		PP_5145	0.35	+0.0
5,871,182	-		PP_5145	0.35	+0.9
5,871,182	-		PP_5145	0.35	+0.6
5,871,182	-		PP_5145	0.35	+1.0