Strain Fitness in Pseudomonas putida KT2440 around PP_5128

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,848,339	+		PP_5127	0.43	+2.7
5,848,340	-		PP_5127	0.43	-1.9
5,848,354	+		PP_5127	0.44	-2.1
5,848,354	+		PP_5127	0.44	+0.4
5,848,445	-		PP_5127	0.51	+0.8
5,848,445	-		PP_5127	0.51	+0.4
5,848,445	-		PP_5127	0.51	+0.6
5,848,480	+		PP_5127	0.54	+0.9
5,848,499	+		PP_5127	0.56	+3.5
5,848,499	+		PP_5127	0.56	-0.5
5,848,517	-		PP_5127	0.57	-2.0
5,849,026	+				+0.8
5,849,026	+				-1.2
5,849,027	-				+0.0
5,849,027	-				+1.3
5,849,027	-				-0.9
5,849,118	+				-0.1
5,849,130	-				-3.1
5,849,158	+				+0.2
5,849,276	+				+0.5
5,849,276	-				-3.5
5,849,277	-				-2.0
5,849,570	-		PP_5128	0.15	-1.2
5,849,611	+		PP_5128	0.17	-3.3
5,849,612	-		PP_5128	0.17	-3.5
5,849,612	-		PP_5128	0.17	-3.1
5,849,612	-		PP_5128	0.17	-5.2
5,849,612	-		PP_5128	0.17	-2.0
5,849,649	+		PP_5128	0.19	+0.4
5,849,649	+		PP_5128	0.19	-5.8
5,849,650	-		PP_5128	0.19	+0.4
5,849,839	+		PP_5128	0.29	-3.7
5,850,001	-		PP_5128	0.38	+0.7
5,850,025	+		PP_5128	0.40	-3.2
5,850,028	+		PP_5128	0.40	-1.2
5,850,028	+		PP_5128	0.40	-3.6
5,850,029	-		PP_5128	0.40	-3.4
5,850,250	+		PP_5128	0.52	-4.7
5,850,535	+		PP_5128	0.67	-3.4
5,850,535	+		PP_5128	0.67	-3.8
5,850,536	-		PP_5128	0.67	+0.4
5,850,536	-		PP_5128	0.67	-1.2
5,850,565	+		PP_5128	0.69	-4.4
5,850,565	+		PP_5128	0.69	-4.5
5,850,565	+		PP_5128	0.69	-2.0
5,850,566	-		PP_5128	0.69	-3.4
5,850,781	+		PP_5128	0.81	-3.7
5,850,929	+		PP_5128	0.89	-4.0
5,850,945	+		PP_5128	0.90	-3.5
5,851,049	+				+0.4
5,851,069	+				+0.4
5,851,069	+				-3.4
5,851,069	+				-1.2
5,851,070	-				-2.4
5,851,070	-				-1.8
5,851,070	-				-3.4
5,851,070	-				-3.0
5,851,110	+				-2.6
5,851,110	+				-3.8
5,851,147	-				-0.1
5,851,471	-		PP_5129	0.24	-0.2
5,851,471	-		PP_5129	0.24	-1.2
5,851,471	-		PP_5129	0.24	+0.1
5,851,494	+		PP_5129	0.27	-3.8
5,851,535	-		PP_5129	0.30	-1.2
5,851,581	+		PP_5129	0.35	+0.4
5,851,581	+		PP_5129	0.35	+1.9
5,851,582	-		PP_5129	0.35	-0.6
5,851,597	+		PP_5129	0.36	-0.5
5,851,598	-		PP_5129	0.36	+0.4
5,851,598	-		PP_5129	0.36	+0.9
5,851,598	-		PP_5129	0.36	-1.4
5,851,601	+		PP_5129	0.36	-1.5
5,851,602	-		PP_5129	0.36	+2.4
5,851,602	-		PP_5129	0.36	-1.1
5,851,635	+		PP_5129	0.39	-2.6
5,851,636	-		PP_5129	0.40	+0.4
5,851,636	-		PP_5129	0.40	-0.6
5,851,636	-		PP_5129	0.40	-2.0
5,851,636	-		PP_5129	0.40	+0.4
5,851,636	-		PP_5129	0.40	-1.7
5,851,639	+		PP_5129	0.40	+0.0
5,851,639	+				+0.4
5,851,639	+		PP_5129	0.40	+0.7
5,851,640	-		PP_5129	0.40	+0.5
5,851,640	-		PP_5129	0.40	+1.0
5,851,640	-		PP_5129	0.40	+0.1
5,851,706	+		PP_5129	0.46	-0.3
5,851,706	+		PP_5129	0.46	-3.2
5,851,706	+		PP_5129	0.46	+0.4
5,851,957	+		PP_5129	0.69	-0.3
5,852,107	+		PP_5129	0.83	+0.4
5,852,126	-		PP_5129	0.85	-1.2
5,852,130	-		PP_5129	0.85	+0.4