Strain Fitness in Pseudomonas putida KT2440 around PP_5108

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,827,038	+				-0.5
5,827,049	+				-0.2
5,827,049	+				+0.7
5,827,049	+				+1.2
5,827,049	+				+1.6
5,827,050	-				+2.4
5,827,050	-				+2.1
5,827,050	-				-2.0
5,827,050	-				+1.9
5,827,050	-				-0.9
5,827,051	+				-0.0
5,827,051	+				-1.5
5,827,052	-				+0.4
5,827,052	-				-1.3
5,827,103	-				+1.8
5,827,215	+		PP_5107	0.18	-2.0
5,827,541	+		PP_5107	0.64	+0.7
5,827,541	+		PP_5107	0.64	-0.6
5,827,541	+		PP_5107	0.64	-1.6
5,827,542	-		PP_5107	0.64	-0.4
5,827,542	-		PP_5107	0.64	-1.2
5,827,542	-		PP_5107	0.64	-3.3
5,827,703	+		PP_5107	0.86	-0.4
5,827,703	+		PP_5107	0.86	+0.4
5,827,836	-				-0.8
5,827,901	+				+0.7
5,827,902	-				-0.6
5,828,869	-				-2.2
5,828,919	-				-2.0
5,828,919	-				-0.5
5,828,958	-				-0.9
5,829,017	-				-4.1
5,829,017	-				+0.4
5,829,019	-				-1.8
5,829,096	+		PP_5109	0.13	-1.3
5,829,096	+		PP_5109	0.13	-0.7
5,829,186	+		PP_5109	0.22	+1.4
5,829,186	+		PP_5109	0.22	-0.6
5,829,186	+		PP_5109	0.22	-2.2
5,829,186	+		PP_5109	0.22	-2.0
5,829,187	-		PP_5109	0.22	+3.9
5,829,187	-		PP_5109	0.22	+0.4
5,829,201	+		PP_5109	0.23	-4.2
5,829,201	+		PP_5109	0.23	-2.2
5,829,201	+		PP_5109	0.23	-0.6
5,829,222	+		PP_5109	0.25	-2.5
5,829,223	-		PP_5109	0.25	-2.0
5,829,266	-		PP_5109	0.30	+0.4
5,829,305	+		PP_5109	0.33	-3.5
5,829,306	-		PP_5109	0.33	+1.7
5,829,309	-		PP_5109	0.34	-1.4
5,829,591	+		PP_5109	0.61	-3.6
5,829,591	+		PP_5109	0.61	-0.6
5,829,592	-		PP_5109	0.61	+0.4
5,829,592	-		PP_5109	0.61	+1.3
5,829,675	+		PP_5109	0.69	+0.4