Strain Fitness in Pseudomonas putida KT2440 around PP_4843

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,510,325	+		PP_4842	0.35	+0.3
5,510,528	+				-0.7
5,510,537	+		PP_4842	0.49	-0.8
5,510,537	+		PP_4842	0.49	-0.9
5,510,537	+		PP_4842	0.49	-2.0
5,510,537	+				-1.7
5,510,538	-		PP_4842	0.49	-2.7
5,510,538	-		PP_4842	0.49	-1.3
5,510,538	-		PP_4842	0.49	-0.7
5,510,538	-		PP_4842	0.49	-1.0
5,510,550	+		PP_4842	0.50	-3.6
5,510,550	+		PP_4842	0.50	-2.3
5,510,551	-		PP_4842	0.50	+1.0
5,510,551	-		PP_4842	0.50	-0.6
5,510,589	-		PP_4842	0.53	+0.3
5,510,828	+		PP_4842	0.69	-0.5
5,510,829	-		PP_4842	0.69	-1.0
5,510,875	+		PP_4842	0.72	+0.5
5,510,875	+		PP_4842	0.72	+0.6
5,510,875	+		PP_4842	0.72	-2.5
5,510,875	+		PP_4842	0.72	+0.4
5,510,876	-		PP_4842	0.72	-0.6
5,510,876	-		PP_4842	0.72	+0.3
5,511,033	+		PP_4842	0.83	+0.2
5,511,074	+		PP_4842	0.85	-3.0
5,511,074	+		PP_4842	0.85	+3.5
5,511,074	+		PP_4842	0.85	+0.4
5,511,074	+		PP_4842	0.85	+0.3
5,511,074	+		PP_4842	0.85	-0.4
5,511,316	-				+0.5
5,511,316	-				+2.6
5,511,316	-				+0.4
5,511,433	+		PP_4843	0.13	-2.5
5,511,434	-		PP_4843	0.13	+0.3
5,511,434	-		PP_4843	0.13	+1.1
5,511,466	+		PP_4843	0.16	-0.6
5,511,571	+		PP_4843	0.26	+2.1
5,511,571	+		PP_4843	0.26	+0.5
5,511,571	+				+0.3
5,511,572	-		PP_4843	0.26	-2.7
5,511,647	-		PP_4843	0.33	+4.1
5,511,760	+		PP_4843	0.44	+1.6
5,511,761	-		PP_4843	0.44	+4.8
5,511,946	+		PP_4843	0.61	+0.9
5,511,946	+		PP_4843	0.61	-1.0
5,512,033	+		PP_4843	0.69	-0.9
5,512,034	-		PP_4843	0.69	-1.1
5,512,106	-		PP_4843	0.76	+2.1
5,512,318	+				+0.9
5,512,318	+				+0.3
5,512,318	+				+0.5
5,512,318	+				+0.9
5,512,560	+		PP_4844	0.23	-0.1
5,512,561	-		PP_4844	0.23	-1.8
5,512,631	-		PP_4844	0.31	-0.6
5,512,631	-		PP_4844	0.31	-0.3
5,512,631	-		PP_4844	0.31	+1.4
5,512,668	+		PP_4844	0.35	+1.0
5,512,669	-		PP_4844	0.35	+0.6
5,512,707	+		PP_4844	0.40	-1.6
5,513,208	+				-1.3
5,513,209	-				-0.5
5,513,209	-				+0.3
5,513,277	+				+0.8
5,513,277	+				-0.1
5,513,278	-				+0.1
5,513,278	-				-2.2
5,513,288	+				+0.5
5,513,288	+				+0.3
5,513,289	-				+0.3
5,513,314	-				-0.7
5,513,325	+				+0.3