Strain Fitness in Pseudomonas putida KT2440 around PP_4421

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
5,015,011	-		PP_4420	0.58	+0.3
5,015,039	+		PP_4420	0.61	-1.1
5,015,039	+		PP_4420	0.61	-0.9
5,015,039	+		PP_4420	0.61	+0.9
5,015,039	+		PP_4420	0.61	+1.1
5,015,040	-		PP_4420	0.61	-1.8
5,015,040	-		PP_4420	0.61	-2.0
5,015,068	+		PP_4420	0.65	-1.1
5,015,069	-		PP_4420	0.65	+0.3
5,015,121	+		PP_4420	0.71	-0.9
5,015,122	-				+2.9
5,015,122	-		PP_4420	0.71	-0.6
5,015,136	+		PP_4420	0.73	-1.7
5,015,148	+		PP_4420	0.75	+2.9
5,015,149	-		PP_4420	0.75	-3.4
5,015,168	+		PP_4420	0.77	-3.6
5,015,169	-		PP_4420	0.77	+0.0
5,015,169	-		PP_4420	0.77	+1.5
5,015,175	+		PP_4420	0.78	+0.4
5,015,210	-		PP_4420	0.82	-0.5
5,015,210	-		PP_4420	0.82	+0.5
5,015,249	-		PP_4420	0.87	+0.2
5,015,263	+		PP_4420	0.89	+1.1
5,015,264	-		PP_4420	0.89	-3.4
5,015,264	-		PP_4420	0.89	+2.9
5,015,357	+				+0.2
5,015,357	+				-1.2
5,015,357	+				-0.8
5,015,357	+				-0.6
5,015,357	+				-0.2
5,015,358	-				-0.8
5,015,363	+				-1.1
5,015,363	+				-2.2
5,015,363	+				-1.3
5,015,364	-				+1.9
5,015,364	-				+0.3
5,015,364	-				+1.2
5,015,428	-				-0.1
5,015,472	+				-0.9
5,015,472	+				+1.9
5,015,472	+				+0.7
5,015,472	+				+0.1
5,015,472	+				+0.9
5,015,472	+				-1.4
5,015,473	-				+1.8
5,015,473	-				+1.3
5,015,473	-				-0.8
5,015,473	-				-0.3
5,015,473	-				-0.8
5,015,517	-				+0.5
5,015,517	-				-0.7
5,015,526	+				+3.8
5,015,526	+				-1.0
5,015,526	+				+1.9
5,015,526	+				+0.6
5,015,527	-				+2.3
5,015,527	-				+0.3
5,015,527	-				-0.4
5,015,527	-				+0.3
5,015,527	-				+0.1
5,015,527	-				-0.1
5,015,566	-		PP_5679	0.19	+0.0
5,015,566	-		PP_5679	0.19	-0.0
5,015,595	+		PP_5679	0.33	-4.0
5,015,595	+		PP_5679	0.33	-1.6
5,015,595	+		PP_5679	0.33	-3.1
5,015,595	+		PP_5679	0.33	-0.1
5,015,596	-		PP_5679	0.33	+1.9
5,015,596	-		PP_5679	0.33	+1.7
5,015,596	-		PP_5679	0.33	-0.3
5,015,596	-		PP_5679	0.33	-1.0
5,015,695	+		PP_5679	0.80	+2.3
5,015,695	+		PP_5679	0.80	-3.6
5,015,695	+		PP_5679	0.80	+1.7
5,015,695	+		PP_5679	0.80	+1.7
5,015,695	+		PP_5679	0.80	+1.1
5,015,696	-		PP_5679	0.80	-0.7
5,015,696	-		PP_5679	0.80	-1.5
5,015,696	-		PP_5679	0.80	-0.5
5,015,696	-		PP_5679	0.80	-0.1
5,015,696	-		PP_5679	0.80	-0.1
5,015,696	-		PP_5679	0.80	-0.5
5,015,696	-		PP_5679	0.80	-0.8
5,015,697	+		PP_5679	0.81	-0.0
5,015,697	+		PP_5679	0.81	+0.1
5,015,697	+		PP_5679	0.81	+0.3
5,015,697	+		PP_5679	0.81	-1.2
5,015,698	-		PP_5679	0.81	+4.0
5,015,698	-		PP_5679	0.81	+0.0
5,015,698	-		PP_5679	0.81	-0.2
5,015,698	-		PP_5679	0.81	+0.4
5,015,698	-		PP_5679	0.81	-0.3
5,015,698	-		PP_5679	0.81	-0.6
5,015,698	-		PP_5679	0.81	-0.4
5,015,702	-		PP_5679	0.83	-0.1
5,015,740	+				-0.2
5,015,740	+				+2.5
5,015,773	+				-2.7
5,015,773	+				-0.5
5,015,773	+				+3.5
5,015,773	+				+0.1
5,015,774	-				-1.4
5,015,774	-				-0.6
5,015,774	-				-0.7
5,015,774	-				+0.1
5,015,825	+				-0.8
5,015,825	+				-2.0
5,015,826	-				+0.3
5,015,826	-				-0.7
5,015,826	-				-0.7
5,015,826	-				-0.4
5,015,826	-				-1.0
5,015,826	-				+0.7
5,015,826	-				+0.3
5,015,841	-				-0.2
5,015,841	-				+1.9
5,015,884	+				-1.2
5,015,885	-				+1.2
5,015,890	+				-4.5
5,015,890	+				-1.0
5,015,890	+				-1.7
5,015,891	-				+0.6
5,015,891	-				-2.2
5,015,891	-				-4.7
5,015,891	-				-2.8
5,015,911	+				-1.5
5,015,924	-				-3.0
5,015,937	+				-0.1
5,015,937	+				-3.2
5,015,938	-				+0.3
5,015,938	-				-0.2
5,016,093	+				-1.7
5,016,281	+		PP_4421	0.22	+0.9
5,016,282	-		PP_4421	0.22	-0.7
5,016,282	-		PP_4421	0.22	-0.5
5,016,282	-		PP_4421	0.22	+0.1
5,016,383	+		PP_4421	0.30	-0.0
5,016,384	-		PP_4421	0.30	-1.0
5,016,432	+		PP_4421	0.33	-0.4
5,016,432	+		PP_4421	0.33	-2.0
5,016,433	-		PP_4421	0.33	-5.2
5,016,433	-		PP_4421	0.33	-0.0
5,016,433	-		PP_4421	0.33	+0.5
5,016,433	-		PP_4421	0.33	-1.7
5,016,434	+		PP_4421	0.33	-2.0
5,016,434	+		PP_4421	0.33	-0.4
5,016,434	+		PP_4421	0.33	+0.6
5,016,434	+		PP_4421	0.33	+0.3
5,016,434	+		PP_4421	0.33	-4.7
5,016,434	+		PP_4421	0.33	-0.4
5,016,434	+		PP_4421	0.33	-0.8
5,016,435	-		PP_4421	0.33	-1.4
5,016,435	-		PP_4421	0.33	+0.3
5,016,435	-		PP_4421	0.33	-3.0
5,016,435	-		PP_4421	0.33	-0.1
5,016,435	-		PP_4421	0.33	-0.9
5,016,435	-		PP_4421	0.33	-0.3
5,016,435	-		PP_4421	0.33	-4.7
5,016,473	+		PP_4421	0.36	-0.9
5,016,492	+		PP_4421	0.37	-4.0
5,016,492	+		PP_4421	0.37	+0.3
5,016,493	-		PP_4421	0.38	+1.0
5,016,496	+		PP_4421	0.38	+0.3
5,016,496	+		PP_4421	0.38	+0.3
5,016,497	-		PP_4421	0.38	+0.0
5,016,524	+		PP_4421	0.40	-1.4
5,016,524	+		PP_4421	0.40	+0.4
5,016,524	+		PP_4421	0.40	-0.5
5,016,525	-		PP_4421	0.40	-1.4
5,016,525	-		PP_4421	0.40	-0.5
5,016,525	-		PP_4421	0.40	-0.3
5,016,525	-		PP_4421	0.40	+0.6
5,016,525	-		PP_4421	0.40	-2.3
5,016,552	+		PP_4421	0.42	+3.0
5,016,553	-		PP_4421	0.42	-2.2
5,016,610	+		PP_4421	0.46	+0.4
5,016,610	+		PP_4421	0.46	-3.1
5,016,632	+		PP_4421	0.47	-0.1
5,016,632	+		PP_4421	0.47	+0.3
5,016,632	+		PP_4421	0.47	-0.4
5,016,633	-		PP_4421	0.48	+1.3
5,016,651	+		PP_4421	0.49	+0.1
5,016,652	-		PP_4421	0.49	-1.5
5,016,652	-		PP_4421	0.49	-1.1
5,016,654	+		PP_4421	0.49	+0.6
5,016,654	+		PP_4421	0.49	-0.8
5,016,654	+		PP_4421	0.49	+0.3
5,016,791	+		PP_4421	0.59	+0.2
5,016,791	+		PP_4421	0.59	+1.1
5,016,792	-		PP_4421	0.59	-1.4
5,016,792	-		PP_4421	0.59	-4.5
5,016,792	-		PP_4421	0.59	+0.0
5,016,795	-		PP_4421	0.59	-0.7
5,016,795	-		PP_4421	0.59	-0.9
5,016,795	-		PP_4421	0.59	-1.7
5,016,811	-		PP_4421	0.60	-1.1
5,016,851	+		PP_4421	0.63	-0.5
5,016,851	+		PP_4421	0.63	-1.5
5,016,852	-		PP_4421	0.63	-1.4
5,016,956	+		PP_4421	0.71	-2.5
5,016,956	+		PP_4421	0.71	+0.4
5,016,956	+		PP_4421	0.71	-0.7
5,016,956	+		PP_4421	0.71	-1.6
5,016,957	-		PP_4421	0.71	-2.5
5,016,957	-		PP_4421	0.71	+0.9
5,016,959	+		PP_4421	0.71	+1.1
5,016,960	-		PP_4421	0.71	-0.1
5,017,010	+		PP_4421	0.75	+0.8
5,017,010	+		PP_4421	0.75	+1.3
5,017,010	+		PP_4421	0.75	+2.7
5,017,011	-		PP_4421	0.75	-0.9
5,017,094	+		PP_4421	0.81	-1.0
5,017,094	+		PP_4421	0.81	+1.9
5,017,094	+		PP_4421	0.81	-2.0
5,017,094	+				+0.3
5,017,094	+		PP_4421	0.81	+1.5
5,017,095	-		PP_4421	0.81	-0.8
5,017,095	-		PP_4421	0.81	-1.7
5,017,095	-		PP_4421	0.81	-4.5
5,017,095	-				+2.9
5,017,095	-		PP_4421	0.81	+0.3
5,017,095	-		PP_4421	0.81	-0.0
5,017,103	+		PP_4421	0.81	+0.3
5,017,104	-		PP_4421	0.81	-2.8
5,017,104	-		PP_4421	0.81	-2.5
5,017,104	-		PP_4421	0.81	-0.7
5,017,106	+		PP_4421	0.82	+1.1
5,017,106	+		PP_4421	0.82	+0.7
5,017,106	+		PP_4421	0.82	+0.3
5,017,160	+		PP_4421	0.85	-1.0
5,017,160	+		PP_4421	0.85	+0.6
5,017,161	-		PP_4421	0.85	+0.3
5,017,178	+		PP_4421	0.87	+0.3
5,017,179	-		PP_4421	0.87	-1.5
5,017,202	+		PP_4421	0.88	-2.5
5,017,203	-		PP_4421	0.89	-0.7
5,017,227	+				+0.8
5,017,227	+				+0.7
5,017,227	+				-0.7
5,017,228	-				-1.2
5,017,228	-				-2.0
5,017,407	-				+0.3
5,017,407	-				+0.4
5,017,407	-				-3.8
5,017,421	+				-1.7
5,017,421	+				+0.3
5,017,421	+				+0.3
5,017,421	+				-2.4
5,017,549	+		PP_4422	0.11	+0.5
5,017,580	+		PP_4422	0.13	-3.8
5,017,581	-				+0.3
5,017,587	-		PP_4422	0.14	+0.3
5,017,587	-		PP_4422	0.14	-2.8
5,017,587	-		PP_4422	0.14	-2.1
5,017,587	-		PP_4422	0.14	+0.3
5,017,627	+		PP_4422	0.16	-0.7
5,017,627	+		PP_4422	0.16	+0.3
5,017,628	-		PP_4422	0.17	-3.7
5,017,889	-		PP_4422	0.34	+0.1
5,017,889	-		PP_4422	0.34	+2.1
5,017,918	+		PP_4422	0.36	+0.3
5,017,919	-		PP_4422	0.36	+0.8
5,017,931	+		PP_4422	0.37	-1.7
5,017,931	+		PP_4422	0.37	+1.0
5,017,932	-		PP_4422	0.37	-1.5
5,017,932	-		PP_4422	0.37	-1.7
5,017,949	+		PP_4422	0.38	-2.0
5,017,949	+		PP_4422	0.38	-0.2
5,017,949	+		PP_4422	0.38	-1.0
5,017,949	+		PP_4422	0.38	-2.7
5,017,949	+		PP_4422	0.38	-0.5
5,017,949	+		PP_4422	0.38	+0.0
5,017,950	-		PP_4422	0.38	+0.2
5,017,950	-		PP_4422	0.38	+0.6
5,017,950	-		PP_4422	0.38	-3.2
5,017,950	-		PP_4422	0.38	-3.3
5,017,950	-		PP_4422	0.38	-3.8
5,018,080	+				-3.1
5,018,235	+		PP_4422	0.58	-3.7