Strain Fitness in Pseudomonas putida KT2440 around PP_4161

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,702,541	+		PP_4160	0.55	+0.4
4,702,541	+		PP_4160	0.55	+1.2
4,702,542	-		PP_4160	0.55	-1.6
4,702,542	-		PP_4160	0.55	+0.8
4,702,542	-		PP_4160	0.55	-1.7
4,702,883	+		PP_4160	0.72	+1.0
4,702,910	+		PP_4160	0.73	+0.3
4,702,911	-		PP_4160	0.73	-2.7
4,702,950	+		PP_4160	0.75	-1.6
4,703,096	-		PP_4160	0.82	+1.7
4,703,326	-				-1.7
4,703,483	+				-3.4
4,703,483	+				-1.1
4,703,483	+				-0.3
4,703,484	-				+0.5
4,703,484	-				-0.3
4,703,484	-				+0.6
4,703,484	-				+0.7
4,703,484	-				+0.3
4,703,713	+		PP_4161	0.14	-0.0
4,703,771	+		PP_4161	0.18	-0.9
4,703,773	+		PP_4161	0.18	+2.9
4,703,774	-		PP_4161	0.18	+0.1
4,703,774	-		PP_4161	0.18	-0.5
4,703,774	-		PP_4161	0.18	+1.0
4,703,779	+		PP_4161	0.18	-3.0
4,703,780	-		PP_4161	0.18	+0.1
4,703,862	+		PP_4161	0.23	+1.5
4,703,863	-		PP_4161	0.23	+0.2
4,703,941	+		PP_4161	0.28	+2.9
4,703,942	-		PP_4161	0.28	+1.1
4,704,010	+		PP_4161	0.32	-1.4
4,704,037	-		PP_4161	0.34	-0.5
4,704,335	-		PP_4161	0.51	-0.3
4,704,465	-		PP_4161	0.59	-0.3
4,704,775	+		PP_4161	0.77	-0.7
4,704,775	+		PP_4161	0.77	-0.9
4,704,775	+		PP_4161	0.77	-1.6
4,704,776	-		PP_4161	0.77	-1.7
4,704,799	+		PP_4161	0.78	-0.3
4,704,967	+		PP_4161	0.88	+0.1
4,704,967	+		PP_4161	0.88	-1.5
4,704,967	+		PP_4161	0.88	+1.6
4,704,968	-		PP_4161	0.88	+4.7
4,704,968	-		PP_4161	0.88	-1.3
4,705,081	+				-0.1
4,705,082	-				+1.0
4,705,082	-				-0.6
4,705,082	-				-2.0
4,705,082	-				+1.3
4,705,084	+				-0.0
4,705,153	+				+2.1
4,705,154	-				-1.4
4,705,174	+				-0.3
4,705,174	+				-1.5
4,705,174	+				-0.9
4,705,174	+				+0.3
4,705,324	+				-2.3
4,705,324	+				+0.2
4,705,325	-				-0.8
4,705,357	+				-0.7
4,705,368	+				-1.9
4,705,433	-				-0.3
4,705,433	-				-0.1
4,705,440	+				+0.3
4,705,440	+				+1.6
4,705,440	+				-1.5
4,705,441	-				+0.5
4,705,441	-				-0.3
4,705,906	-		PP_4162	0.44	+3.3
4,706,077	-		PP_4162	0.61	+0.6
4,706,092	+		PP_4162	0.62	+0.3
4,706,092	+		PP_4162	0.62	-0.6
4,706,092	+		PP_4162	0.62	-1.4
4,706,092	+		PP_4162	0.62	+1.5
4,706,093	-		PP_4162	0.62	+0.5