Strain Fitness in Pseudomonas putida KT2440 around PP_4069

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,593,856	+				+2.5
4,593,907	+				-0.3
4,593,908	-				+0.7
4,593,908	-				+0.9
4,593,908	-				+0.5
4,594,067	+		PP_4068	0.10	+0.2
4,594,067	+		PP_4068	0.10	+0.6
4,594,068	-		PP_4068	0.11	-0.7
4,594,068	-		PP_4068	0.11	-0.9
4,594,068	-		PP_4068	0.11	-4.1
4,594,068	-		PP_4068	0.11	+4.0
4,594,177	-		PP_4068	0.26	-1.2
4,594,177	-		PP_4068	0.26	-3.4
4,594,314	+		PP_4068	0.46	-4.7
4,594,407	+		PP_4068	0.59	+0.1
4,594,421	+		PP_4068	0.61	-2.6
4,594,421	+		PP_4068	0.61	+0.4
4,594,421	+		PP_4068	0.61	+1.8
4,594,422	-		PP_4068	0.61	-2.6
4,594,422	-		PP_4068	0.61	+0.2
4,594,471	+		PP_4068	0.68	+1.4
4,594,472	-		PP_4068	0.68	+2.0
4,594,472	-		PP_4068	0.68	-0.1
4,594,472	-		PP_4068	0.68	-0.1
4,594,472	-		PP_4068	0.68	-0.6
4,594,472	-		PP_4068	0.68	+0.6
4,594,605	+		PP_4068	0.87	-1.0
4,594,605	+		PP_4068	0.87	+0.7
4,594,606	-		PP_4068	0.87	-0.2
4,594,606	-		PP_4068	0.87	-1.5
4,594,606	-		PP_4068	0.87	+0.4
4,594,606	-		PP_4068	0.87	-0.6
4,594,643	+				-0.6
4,594,643	+				-4.0
4,594,644	-				+0.4
4,594,644	-				-0.2
4,594,644	-				+2.0
4,594,649	+				-4.0
4,594,649	+				-0.6
4,594,650	-				-0.7
4,594,650	-				+0.8
4,594,668	-				-0.9
4,594,778	+				+1.8
4,594,792	+				+1.1
4,594,851	+		PP_4069	0.22	-1.6
4,594,851	+		PP_4069	0.22	-2.5
4,594,851	+		PP_4069	0.22	-1.7
4,594,852	-		PP_4069	0.22	-0.3
4,595,093	-				+0.4
4,595,093	-				-0.2
4,595,093	-				+2.7
4,595,094	+				+0.5
4,595,094	+				-4.0
4,595,095	-				+1.7
4,595,095	-				+0.1
4,595,095	-				-1.6
4,595,115	+				+0.5
4,595,115	+				-0.2
4,595,115	+				-0.4
4,595,116	-				+0.9
4,595,192	+				+0.4
4,595,293	+				+1.2
4,595,309	+				-2.0
4,595,310	-				-2.1
4,595,310	-				-0.9
4,595,393	-				+0.4
4,595,513	+				-3.1
4,595,513	+				+2.4
4,595,513	+				+0.6
4,595,514	-				-3.0
4,595,514	-				+1.8
4,595,514	-				+3.2
4,595,514	-				-2.4
4,595,516	-				+3.0
4,595,516	-				-1.6
4,595,516	-				-0.2
4,595,516	-				-2.6
4,595,642	+		PP_4070	0.21	+0.2
4,595,642	+		PP_4070	0.21	-1.6
4,595,642	+		PP_4070	0.21	-0.6
4,595,643	-		PP_4070	0.21	+0.1
4,595,643	-		PP_4070	0.21	-1.2
4,595,643	-		PP_4070	0.21	+1.9
4,595,794	+		PP_4070	0.51	-2.2
4,595,794	+				+0.4
4,595,794	+		PP_4070	0.51	+0.2
4,595,795	-		PP_4070	0.51	+0.4
4,595,795	-		PP_4070	0.51	-1.6
4,595,836	-		PP_4070	0.59	+3.9
4,595,892	+		PP_4070	0.70	+0.2
4,596,070	-				+2.1
4,596,070	-				+0.4
4,596,070	-				+0.3
4,596,070	-				+0.4
4,596,070	-				-0.1