Strain Fitness in Pseudomonas putida KT2440 around PP_3982

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,488,650	+				-0.4
4,488,676	+				+1.9
4,488,676	+				-3.2
4,488,676	+				-2.8
4,488,676	+				-1.7
4,488,676	+				+3.0
4,488,676	+				-2.3
4,488,676	+				-1.7
4,488,679	+				+0.3
4,488,679	+				+1.6
4,488,679	+				+0.7
4,488,709	-				+0.6
4,488,792	+				+0.4
4,488,792	+				+0.4
4,488,793	-				-0.8
4,488,843	+				-4.2
4,488,952	-				-0.9
4,488,960	+				-0.0
4,488,960	+				-1.6
4,488,961	-				-2.8
4,488,961	-				-0.9
4,488,961	-				+0.2
4,488,961	-				-0.0
4,489,003	+				+1.3
4,489,004	-				+1.7
4,489,004	-				-1.0
4,489,004	-				+1.4
4,489,004	-				-0.3
4,489,011	+				+0.9
4,489,018	+				+0.7
4,489,070	+				-1.0
4,489,071	-				+0.1
4,489,082	+				+1.1
4,489,083	-				-2.8
4,489,083	-				-3.5
4,489,083	-				-1.3
4,489,083	-				-1.3
4,489,083	-				-2.1
4,489,083	-				+0.5
4,489,083	-				-0.3
4,489,111	+				+0.8
4,489,138	+				-0.7
4,489,143	-				-1.1
4,489,143	-				+0.8
4,489,143	-				-1.7
4,489,257	+				-2.2
4,489,258	-				+0.2
4,489,333	+				+0.1
4,489,334	-				-1.3
4,489,445	+				-0.7
4,489,446	-				+1.5
4,489,446	-				-1.8
4,489,446	-				+0.4
4,489,446	-				+1.4
4,489,446	-				+0.4
4,489,446	-				+0.2
4,489,460	+				-3.3
4,489,461	-				+1.2
4,489,633	+		PP_3982	0.16	+0.1
4,489,634	-		PP_3982	0.16	-1.7
4,489,673	-		PP_3982	0.17	-1.5
4,489,699	+		PP_3982	0.18	-0.1
4,489,699	+		PP_3982	0.18	-2.8
4,489,700	-		PP_3982	0.18	-0.2
4,489,766	+		PP_3982	0.21	-0.7
4,489,766	+		PP_3982	0.21	-2.0
4,489,766	+		PP_3982	0.21	+0.6
4,489,767	-		PP_3982	0.21	-3.3
4,489,770	+		PP_3982	0.21	+1.4
4,489,771	-		PP_3982	0.21	-3.8
4,489,782	-		PP_3982	0.21	+0.9
4,489,782	-		PP_3982	0.21	+4.3
4,489,806	+		PP_3982	0.22	-3.5
4,489,806	+		PP_3982	0.22	-3.4
4,489,903	-		PP_3982	0.26	+2.3
4,489,998	+		PP_3982	0.29	+1.1
4,489,999	-		PP_3982	0.30	+1.2
4,490,017	-		PP_3982	0.30	+0.4
4,490,077	+		PP_3982	0.32	-1.4
4,490,168	-		PP_3982	0.36	+0.4
4,490,168	-		PP_3982	0.36	+2.4
4,490,168	-		PP_3982	0.36	-0.9
4,490,212	-		PP_3982	0.38	-1.9
4,490,364	+		PP_3982	0.43	-3.9
4,490,364	+		PP_3982	0.43	+1.7
4,490,375	+		PP_3982	0.44	+0.7
4,490,375	+		PP_3982	0.44	+2.2
4,490,375	+		PP_3982	0.44	+0.7
4,490,376	-		PP_3982	0.44	+0.4
4,490,527	+		PP_3982	0.49	+0.5
4,490,528	-		PP_3982	0.50	+2.6
4,490,528	-		PP_3982	0.50	+0.4
4,490,528	-		PP_3982	0.50	+1.5
4,490,581	+		PP_3982	0.52	-3.9
4,490,581	+		PP_3982	0.52	-1.9
4,490,581	+		PP_3982	0.52	-1.9
4,490,582	-		PP_3982	0.52	+0.4
4,490,588	+		PP_3982	0.52	-2.4
4,490,588	+		PP_3982	0.52	+1.1
4,490,588	+		PP_3982	0.52	+1.0
4,490,588	+		PP_3982	0.52	-2.2
4,490,588	+		PP_3982	0.52	-0.4
4,490,588	+		PP_3982	0.52	-0.2
4,490,589	-		PP_3982	0.52	-2.4
4,490,589	-		PP_3982	0.52	+0.7
4,490,589	-		PP_3982	0.52	-1.7
4,490,589	-		PP_3982	0.52	-0.7
4,490,589	-		PP_3982	0.52	-1.2
4,490,589	-		PP_3982	0.52	+0.6
4,490,589	-		PP_3982	0.52	-1.0
4,490,589	-		PP_3982	0.52	+0.2
4,490,590	+		PP_3982	0.52	+2.0
4,490,590	+		PP_3982	0.52	+0.3
4,490,590	+		PP_3982	0.52	-0.4
4,490,590	+		PP_3982	0.52	+0.3
4,490,590	+		PP_3982	0.52	-0.3
4,490,590	+		PP_3982	0.52	+0.3
4,490,590	+		PP_3982	0.52	-1.9
4,490,590	+		PP_3982	0.52	+1.7
4,490,590	+		PP_3982	0.52	-0.9
4,490,590	+		PP_3982	0.52	-1.7
4,490,590	+		PP_3982	0.52	-1.0
4,490,590	+		PP_3982	0.52	+1.7
4,490,591	-		PP_3982	0.52	-5.1
4,490,591	-		PP_3982	0.52	-0.3
4,490,591	-		PP_3982	0.52	+0.4
4,490,591	-		PP_3982	0.52	+0.2
4,490,591	-		PP_3982	0.52	+0.4
4,490,591	-		PP_3982	0.52	+0.1
4,490,591	-		PP_3982	0.52	+3.6
4,490,591	-		PP_3982	0.52	+0.4
4,490,591	-		PP_3982	0.52	-0.3
4,490,591	-		PP_3982	0.52	-0.6
4,490,591	-		PP_3982	0.52	-1.1
4,490,628	+		PP_3982	0.53	-0.3
4,490,628	+		PP_3982	0.53	-1.9
4,490,629	-		PP_3982	0.53	-2.7
4,490,630	+		PP_3982	0.53	-1.7
4,490,630	+		PP_3982	0.53	-1.9
4,490,630	+		PP_3982	0.53	-1.8
4,490,630	+		PP_3982	0.53	-3.6
4,490,630	+		PP_3982	0.53	-1.3
4,490,630	+		PP_3982	0.53	-0.3
4,490,631	-		PP_3982	0.53	+2.0
4,490,631	-		PP_3982	0.53	+0.5
4,490,631	-		PP_3982	0.53	-0.0
4,490,631	-		PP_3982	0.53	-0.8
4,490,631	-		PP_3982	0.53	+0.6
4,490,631	-		PP_3982	0.53	-1.2
4,490,631	-		PP_3982	0.53	+0.4
4,490,641	+		PP_3982	0.54	-0.3
4,490,641	+		PP_3982	0.54	-0.5
4,490,641	+		PP_3982	0.54	-0.9
4,490,641	+		PP_3982	0.54	+0.7
4,490,715	+		PP_3982	0.57	-0.9
4,490,715	+		PP_3982	0.57	-0.2
4,490,715	+		PP_3982	0.57	+0.4
4,490,715	+		PP_3982	0.57	+0.6
4,490,716	-		PP_3982	0.57	-3.1
4,490,716	-		PP_3982	0.57	+0.5
4,490,716	-		PP_3982	0.57	+1.1
4,490,778	+		PP_3982	0.59	-1.4
4,490,778	+		PP_3982	0.59	+0.2
4,490,779	-		PP_3982	0.59	-1.0
4,490,809	+		PP_3982	0.60	-0.3
4,490,913	-		PP_3982	0.64	-1.5
4,490,920	+		PP_3982	0.64	-0.6
4,490,920	+		PP_3982	0.64	+0.5
4,490,920	+		PP_3982	0.64	-0.2
4,490,921	-		PP_3982	0.64	-2.2
4,490,921	-		PP_3982	0.64	-1.6
4,490,955	+		PP_3982	0.66	-1.3
4,490,956	-		PP_3982	0.66	-1.1
4,490,956	-		PP_3982	0.66	-1.3
4,491,043	+		PP_3982	0.69	+1.4
4,491,043	+		PP_3982	0.69	-1.5
4,491,043	+		PP_3982	0.69	+0.2
4,491,043	+		PP_3982	0.69	+0.9
4,491,044	-		PP_3982	0.69	+3.9
4,491,044	-		PP_3982	0.69	+0.2
4,491,044	-		PP_3982	0.69	+0.6
4,491,044	-		PP_3982	0.69	-1.1
4,491,211	+		PP_3982	0.75	+0.6
4,491,211	+		PP_3982	0.75	+0.8
4,491,212	-		PP_3982	0.75	+0.4
4,491,237	+		PP_3982	0.76	-2.9
4,491,322	+		PP_3982	0.80	+0.4
4,491,335	+		PP_3982	0.80	+0.4
4,491,336	-		PP_3982	0.80	-4.0
4,491,336	-		PP_3982	0.80	+0.1
4,491,336	-		PP_3982	0.80	-0.5
4,491,410	+		PP_3982	0.83	+2.1
4,491,410	+		PP_3982	0.83	+0.2
4,491,411	-		PP_3982	0.83	-1.8
4,491,411	-		PP_3982	0.83	-1.2
4,491,422	-		PP_3982	0.83	-0.8
4,491,437	+		PP_3982	0.84	+0.4
4,491,526	+		PP_3982	0.87	-0.4
4,491,526	+		PP_3982	0.87	-0.6
4,491,526	+		PP_3982	0.87	-1.4
4,491,526	+		PP_3982	0.87	-0.4
4,491,526	+		PP_3982	0.87	-2.1
4,491,527	-		PP_3982	0.87	-1.5
4,491,527	-		PP_3982	0.87	+0.2
4,491,527	-		PP_3982	0.87	-0.6
4,491,527	-		PP_3982	0.87	+0.8
4,491,669	-				+2.3
4,491,737	+				+0.5
4,491,737	+				-0.6
4,491,737	+				+1.3
4,491,738	-				-1.2
4,491,738	-				-1.6
4,491,738	-				-1.7
4,491,828	+				-0.8
4,491,829	-				-1.8
4,491,841	+				-1.5
4,491,841	+				+0.2
4,491,842	-				+0.2
4,491,842	-				+1.2
4,491,897	+				+0.1
4,491,897	+				-3.8
4,491,898	-				-3.1
4,491,898	-				-0.9
4,491,898	-				-0.8
4,491,916	+				+0.4
4,491,920	+				+1.4
4,491,920	+				+0.1
4,491,920	+				+2.8
4,491,920	+				+3.4
4,491,921	-				-3.5
4,491,921	-				+0.7
4,491,921	-				+3.0
4,491,964	-				+2.6
4,491,964	-				+0.8
4,491,983	-				+3.3
4,492,028	+				+0.2
4,492,028	+				-0.9
4,492,029	-				+4.1
4,492,029	-				-0.3
4,492,029	-				-3.4
4,492,067	+				+2.7
4,492,067	+				-0.4
4,492,068	-				-0.3
4,492,068	-				-4.6
4,492,068	-				-2.6
4,492,071	+				-1.9
4,492,071	+				-0.9
4,492,071	+				-0.8
4,492,071	+				+1.1
4,492,071	+				+1.4
4,492,071	+				-4.1
4,492,072	-				-0.6
4,492,072	-				-0.1
4,492,072	-				-1.5
4,492,072	-				-0.4
4,492,072	-				+0.4
4,492,072	-				-0.1
4,492,072	-				-0.3
4,492,072	-				-1.6
4,492,072	-				+2.4
4,492,073	+				-0.4
4,492,073	+				+0.5
4,492,073	+				-3.7
4,492,073	+				-2.5
4,492,073	+				-0.1
4,492,074	-				-1.6
4,492,074	-				-1.5
4,492,074	-				-1.6
4,492,074	-				-0.4
4,492,074	-				-1.6
4,492,074	-				+0.8
4,492,074	-				+0.4
4,492,097	+				+0.4
4,492,098	-				-0.4
4,492,098	-				-4.1
4,492,129	+				-2.2
4,492,130	-				+0.4
4,492,138	+				+2.7
4,492,138	+				+1.4
4,492,139	-				-0.9
4,492,184	-				+0.8
4,492,184	-				-0.6
4,492,184	-				+0.0
4,492,264	+		PP_3983	0.19	+0.6
4,492,264	+		PP_3983	0.19	-1.7
4,492,264	+		PP_3983	0.19	-0.3
4,492,265	-		PP_3983	0.19	-0.3
4,492,265	-		PP_3983	0.19	+0.8
4,492,265	-		PP_3983	0.19	-2.5
4,492,265	-		PP_3983	0.19	-1.7
4,492,268	+		PP_3983	0.19	-0.3
4,492,268	+		PP_3983	0.19	-0.7
4,492,268	+		PP_3983	0.19	+0.1
4,492,331	+		PP_3983	0.27	-1.3
4,492,356	+		PP_3983	0.30	-4.0
4,492,362	+		PP_3983	0.31	+1.4
4,492,362	+		PP_3983	0.31	-1.5
4,492,362	+		PP_3983	0.31	+0.4
4,492,362	+		PP_3983	0.31	+0.3
4,492,362	+		PP_3983	0.31	+0.1
4,492,362	+		PP_3983	0.31	-2.6
4,492,363	-		PP_3983	0.31	-2.2
4,492,363	-		PP_3983	0.31	+0.7
4,492,363	-		PP_3983	0.31	+0.2
4,492,363	-		PP_3983	0.31	+0.4
4,492,382	-		PP_3983	0.34	-2.5
4,492,509	+		PP_3983	0.50	-3.3
4,492,510	-		PP_3983	0.50	-0.5
4,492,606	+		PP_3983	0.62	-2.1
4,492,606	+		PP_3983	0.62	-1.6
4,492,606	+		PP_3983	0.62	+0.4
4,492,606	+		PP_3983	0.62	-1.4
4,492,607	-		PP_3983	0.62	+0.2
4,492,640	+		PP_3983	0.67	+1.1
4,492,641	-		PP_3983	0.67	-0.3
4,492,659	+		PP_3983	0.69	+2.2
4,492,660	-		PP_3983	0.69	+0.2
4,492,817	+		PP_3983	0.89	+0.4
4,492,818	-		PP_3983	0.89	-4.4