Strain Fitness in Pseudomonas putida KT2440 around PP_3920

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,425,373	+				+0.4
4,425,374	-				+0.2
4,425,374	-				+0.6
4,425,406	+				-0.6
4,425,406	+				+2.1
4,425,406	+				-0.7
4,425,406	+				-0.4
4,425,406	+				-3.8
4,425,418	+				-2.9
4,425,418	+				-0.8
4,425,418	+				+0.4
4,425,419	-				+0.6
4,425,419	-				+0.1
4,425,450	+				-2.7
4,425,488	-				+0.0
4,425,489	+				-2.6
4,425,579	+				+0.4
4,425,580	-				+0.5
4,425,723	-				+3.2
4,425,723	-				+0.6
4,425,758	+				-4.1
4,425,758	+				-3.6
4,425,758	+				-2.6
4,425,758	+				-2.6
4,425,759	-				+2.0
4,425,759	-				+5.1
4,425,759	-				-1.0
4,425,759	-				+1.1
4,425,762	+				-2.9
4,425,762	+				-0.6
4,425,763	-				+0.9
4,425,763	-				+2.0
4,425,763	-				+1.3
4,425,763	-				-0.7
4,425,872	+		PP_3917	0.38	-2.7
4,425,873	-		PP_3917	0.39	-1.1
4,425,873	-		PP_3917	0.39	-1.9
4,425,947	-		PP_3917	0.60	-4.3
4,425,947	-		PP_3917	0.60	+4.6
4,425,992	-		PP_3917	0.74	-2.8
4,426,001	-		PP_3917	0.76	+2.6
4,426,019	-		PP_3917	0.82	-0.9
4,426,019	-		PP_3917	0.82	+0.7
4,426,200	-		PP_3919	0.33	+0.8
4,426,200	-		PP_3919	0.33	-1.6
4,426,261	+		PP_3919	0.57	-1.2
4,426,413	-				-1.1
4,426,413	-				-2.4
4,426,413	-				-2.9
4,426,463	+				-0.6
4,426,486	+		PP_3920	0.11	-2.3
4,426,486	+		PP_3920	0.11	+0.7
4,426,486	+				+0.4
4,426,486	+		PP_3920	0.11	+1.4
4,426,487	-		PP_3920	0.11	-0.6
4,426,487	-		PP_3920	0.11	-0.4
4,426,487	-		PP_3920	0.11	-0.3
4,426,592	+		PP_3920	0.21	-2.0
4,426,592	+		PP_3920	0.21	-0.8
4,426,593	-		PP_3920	0.22	+0.2
4,426,647	-		PP_3920	0.27	-1.0
4,426,721	+		PP_3920	0.34	-0.6
4,426,760	+		PP_3920	0.37	-0.7
4,426,783	-		PP_3920	0.40	+0.4
4,426,783	-		PP_3920	0.40	+1.3
4,426,783	-		PP_3920	0.40	+1.9
4,426,783	-		PP_3920	0.40	+1.4
4,426,810	+		PP_3920	0.42	-1.4
4,426,810	+		PP_3920	0.42	-1.6
4,426,811	-		PP_3920	0.42	+1.8
4,426,901	+		PP_3920	0.51	-0.6
4,426,902	-		PP_3920	0.51	-1.9
4,426,902	-		PP_3920	0.51	+0.6
4,426,946	+		PP_3920	0.55	+1.2
4,426,946	+		PP_3920	0.55	-0.2
4,426,946	+		PP_3920	0.55	-0.6
4,426,975	-		PP_3920	0.58	+1.4
4,426,975	-		PP_3920	0.58	-0.6
4,426,975	-		PP_3920	0.58	+0.3
4,427,009	+		PP_3920	0.61	-0.0
4,427,010	-		PP_3920	0.61	+0.4
4,427,058	+		PP_3920	0.66	+3.4
4,427,059	-		PP_3920	0.66	+0.4
4,427,073	+		PP_3920	0.67	-4.9
4,427,073	+		PP_3920	0.67	-2.4
4,427,130	+		PP_3920	0.73	-0.1
4,427,131	-		PP_3920	0.73	+0.4
4,427,131	-		PP_3920	0.73	-0.6
4,427,441	+				+0.4
4,427,625	-				+0.4
4,427,800	-				+0.4
4,427,820	+				+0.4
4,427,820	+				-1.4
4,427,821	-				-1.6
4,427,849	+		PP_3922	0.10	+0.4
4,427,849	+		PP_3922	0.10	+1.8
4,427,894	+		PP_3922	0.15	+0.4
4,427,895	-		PP_3922	0.15	-0.4
4,428,053	+		PP_3922	0.30	+2.7
4,428,053	+		PP_3922	0.30	-2.9
4,428,054	-		PP_3922	0.30	-1.9
4,428,107	+		PP_3922	0.35	+1.4
4,428,192	+		PP_3922	0.44	+1.0
4,428,192	+		PP_3922	0.44	-0.2
4,428,192	+		PP_3922	0.44	+0.4
4,428,192	+		PP_3922	0.44	-2.6
4,428,192	+		PP_3922	0.44	-0.8
4,428,192	+		PP_3922	0.44	-1.9
4,428,192	+		PP_3922	0.44	+1.8
4,428,193	-		PP_3922	0.44	+1.3
4,428,193	-		PP_3922	0.44	+0.9
4,428,193	-		PP_3922	0.44	-0.2
4,428,193	-		PP_3922	0.44	+1.0
4,428,251	+		PP_3922	0.50	-1.1
4,428,251	+		PP_3922	0.50	-0.5
4,428,252	-		PP_3922	0.50	+0.4
4,428,341	+		PP_3922	0.58	+0.8
4,428,341	+		PP_3922	0.58	+0.4