Strain Fitness in Pseudomonas putida KT2440 around PP_3894

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,409,370	+		PP_3893	0.32	-1.8
4,409,370	+		PP_3893	0.32	+2.3
4,409,370	+		PP_3893	0.32	-0.9
4,409,371	-		PP_3893	0.33	-0.5
4,409,371	-		PP_3893	0.33	-1.9
4,409,371	-		PP_3893	0.33	+1.1
4,409,371	-		PP_3893	0.33	+2.5
4,409,371	-		PP_3893	0.33	+2.6
4,409,468	+		PP_3893	0.39	-2.7
4,409,468	+		PP_3893	0.39	-0.9
4,409,468	+		PP_3893	0.39	-0.2
4,409,468	+		PP_3893	0.39	+0.5
4,409,469	-		PP_3893	0.40	-0.6
4,409,469	-		PP_3893	0.40	-0.3
4,409,564	-		PP_3893	0.46	+0.5
4,409,662	-		PP_3893	0.53	+1.0
4,409,791	+		PP_3893	0.63	-1.1
4,409,930	-		PP_3893	0.73	+2.0
4,410,018	+		PP_3893	0.79	-1.5
4,410,019	-		PP_3893	0.79	-2.5
4,410,401	+		PP_3894	0.11	-0.5
4,410,402	-		PP_3894	0.11	-0.0
4,410,402	-		PP_3894	0.11	-1.2
4,410,431	+		PP_3894	0.15	-1.0
4,410,432	-		PP_3894	0.15	-2.1
4,410,588	-		PP_3894	0.33	+0.5
4,410,588	-		PP_3894	0.33	+2.0
4,410,714	+		PP_3894	0.49	-1.1
4,410,715	-		PP_3894	0.49	-0.4
4,410,715	-		PP_3894	0.49	+0.5
4,410,720	+		PP_3894	0.49	+1.6
4,410,721	-		PP_3894	0.49	-0.3
4,410,721	-		PP_3894	0.49	+0.2
4,410,733	+		PP_3894	0.51	-2.0
4,410,734	-		PP_3894	0.51	+2.0
4,410,734	-		PP_3894	0.51	+1.5
4,410,734	-		PP_3894	0.51	+1.0
4,410,734	-		PP_3894	0.51	-1.3
4,410,772	+		PP_3894	0.56	-0.4
4,410,773	-		PP_3894	0.56	-3.3
4,410,784	-		PP_3894	0.57	+1.1
4,410,950	+		PP_3894	0.77	+3.5
4,410,968	+		PP_3894	0.79	-0.2
4,410,968	+		PP_3894	0.79	-1.0
4,410,968	+		PP_3894	0.79	+0.1
4,410,969	-		PP_3894	0.79	-1.5
4,410,969	-		PP_3894	0.79	-0.4
4,411,002	-		PP_3894	0.83	+3.8
4,411,079	+				-2.1
4,411,079	+				-0.3
4,411,079	+				-0.5
4,411,079	+				-0.3
4,411,079	+				-0.8
4,411,080	-				+2.8
4,411,080	-				-1.9
4,411,080	-				+0.5
4,411,080	-				+0.5
4,411,096	-				+2.8
4,411,096	-				+0.5
4,411,217	-				+3.0
4,411,668	+				-0.5
4,411,764	+				+0.5