Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3871 and PP_3873 are separated by 29 nucleotides PP_3873 and PP_3874 overlap by 8 nucleotides PP_3874 and PP_3875 are separated by 2 nucleotides PP_3875 and PP_3876 are separated by 2 nucleotides PP_3876 and PP_3877 overlap by 26 nucleotides
PP_3871: PP_3871 - conserved protein of unknown function, at 4,395,180 to 4,395,773
_3871
PP_3873: PP_3873 - conserved protein of unknown function, at 4,395,803 to 4,396,318
_3873
PP_3874: PP_3874 - conserved protein of unknown function, at 4,396,311 to 4,396,685
_3874
PP_3875: PP_3875 - conserved protein of unknown function, at 4,396,688 to 4,397,239
_3875
PP_3876: PP_3876 - conserved protein of unknown function, at 4,397,242 to 4,397,568
_3876
PP_3877: PP_3877 - conserved protein of unknown function, at 4,397,543 to 4,398,856
_3877
Position (kb)
4396
4397
4398 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 4395.958 kb on + strand, within PP_3873 at 4395.959 kb on - strand, within PP_3873 at 4395.959 kb on - strand, within PP_3873 at 4395.959 kb on - strand, within PP_3873 at 4395.959 kb on - strand, within PP_3873 at 4396.029 kb on + strand, within PP_3873 at 4396.029 kb on + strand, within PP_3873 at 4396.029 kb on + strand, within PP_3873 at 4396.030 kb on - strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.041 kb on + strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.042 kb on - strand, within PP_3873 at 4396.044 kb on + strand, within PP_3873 at 4396.045 kb on - strand, within PP_3873 at 4396.045 kb on - strand, within PP_3873 at 4396.045 kb on - strand, within PP_3873 at 4396.129 kb on + strand, within PP_3873 at 4396.130 kb on - strand, within PP_3873 at 4396.149 kb on + strand, within PP_3873 at 4396.150 kb on - strand, within PP_3873 at 4396.312 kb on + strand at 4396.313 kb on - strand at 4396.318 kb on + strand at 4396.318 kb on + strand at 4396.520 kb on - strand, within PP_3874 at 4396.520 kb on - strand, within PP_3874 at 4396.628 kb on + strand, within PP_3874 at 4396.629 kb on - strand, within PP_3874 at 4396.667 kb on + strand at 4396.667 kb on + strand at 4396.667 kb on + strand at 4396.668 kb on - strand at 4396.668 kb on - strand at 4396.671 kb on + strand at 4396.671 kb on + strand at 4396.671 kb on + strand at 4396.672 kb on - strand at 4396.672 kb on - strand at 4396.679 kb on + strand at 4396.863 kb on + strand, within PP_3875 at 4396.874 kb on + strand, within PP_3875 at 4396.875 kb on - strand, within PP_3875 at 4396.911 kb on + strand, within PP_3875 at 4396.921 kb on + strand, within PP_3875 at 4396.921 kb on + strand, within PP_3875 at 4396.922 kb on - strand, within PP_3875 at 4397.221 kb on - strand at 4397.221 kb on - strand at 4397.384 kb on + strand, within PP_3876 at 4397.472 kb on + strand, within PP_3876 at 4397.473 kb on - strand, within PP_3876 at 4397.545 kb on - strand at 4397.554 kb on + strand at 4397.809 kb on + strand, within PP_3877 at 4397.834 kb on + strand, within PP_3877 at 4397.835 kb on - strand, within PP_3877 at 4397.835 kb on - strand, within PP_3877 at 4397.860 kb on - strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.155 kb on + strand, within PP_3877 at 4398.156 kb on - strand, within PP_3877 at 4398.156 kb on - strand, within PP_3877
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 4,395,958 + PP_3873 0.30 +0.4 4,395,959 - PP_3873 0.30 -0.5 4,395,959 - PP_3873 0.30 -0.8 4,395,959 - PP_3873 0.30 +1.1 4,395,959 - PP_3873 0.30 +0.7 4,396,029 + PP_3873 0.44 -4.9 4,396,029 + PP_3873 0.44 -1.1 4,396,029 + PP_3873 0.44 -0.6 4,396,030 - PP_3873 0.44 +0.4 4,396,041 + PP_3873 0.46 -1.9 4,396,041 + PP_3873 0.46 +0.9 4,396,041 + PP_3873 0.46 +1.9 4,396,041 + PP_3873 0.46 -0.5 4,396,041 + PP_3873 0.46 +2.4 4,396,041 + PP_3873 0.46 -0.6 4,396,041 + PP_3873 0.46 +0.2 4,396,042 - PP_3873 0.46 -2.1 4,396,042 - PP_3873 0.46 -1.4 4,396,042 - PP_3873 0.46 -3.3 4,396,042 - PP_3873 0.46 -4.8 4,396,042 - PP_3873 0.46 -0.6 4,396,042 - PP_3873 0.46 +1.0 4,396,042 - PP_3873 0.46 -3.5 4,396,042 - PP_3873 0.46 -0.4 4,396,042 - PP_3873 0.46 +1.3 4,396,044 + PP_3873 0.47 +2.0 4,396,045 - PP_3873 0.47 -0.1 4,396,045 - PP_3873 0.47 +0.4 4,396,045 - PP_3873 0.47 -0.2 4,396,129 + PP_3873 0.63 -0.6 4,396,130 - PP_3873 0.63 +0.4 4,396,149 + PP_3873 0.67 -0.9 4,396,150 - PP_3873 0.67 +0.4 4,396,312 + -0.4 4,396,313 - -0.4 4,396,318 + -2.3 4,396,318 + -2.0 4,396,520 - PP_3874 0.56 -4.3 4,396,520 - PP_3874 0.56 +0.5 4,396,628 + PP_3874 0.85 +0.4 4,396,629 - PP_3874 0.85 -0.3 4,396,667 + -2.4 4,396,667 + +1.2 4,396,667 + +3.9 4,396,668 - +0.4 4,396,668 - +0.2 4,396,671 + -0.6 4,396,671 + -0.7 4,396,671 + +0.6 4,396,672 - -4.0 4,396,672 - -0.6 4,396,679 + +0.3 4,396,863 + PP_3875 0.32 -1.3 4,396,874 + PP_3875 0.34 -3.1 4,396,875 - PP_3875 0.34 -0.6 4,396,911 + PP_3875 0.40 -1.3 4,396,921 + PP_3875 0.42 -2.4 4,396,921 + PP_3875 0.42 -0.7 4,396,922 - PP_3875 0.42 -0.4 4,397,221 - -2.4 4,397,221 - -0.2 4,397,384 + PP_3876 0.43 +0.4 4,397,472 + PP_3876 0.70 -0.0 4,397,473 - PP_3876 0.71 +0.2 4,397,545 - +1.7 4,397,554 + -2.7 4,397,809 + PP_3877 0.20 +0.3 4,397,834 + PP_3877 0.22 -2.1 4,397,835 - PP_3877 0.22 -0.6 4,397,835 - PP_3877 0.22 -0.2 4,397,860 - PP_3877 0.24 -1.9 4,398,155 + PP_3877 0.47 -4.1 4,398,155 + PP_3877 0.47 -0.9 4,398,155 + PP_3877 0.47 -0.8 4,398,155 + PP_3877 0.47 -0.5 4,398,156 - PP_3877 0.47 +1.2 4,398,156 - PP_3877 0.47 +2.8
Or see this region's nucleotide sequence