Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3803 and PP_3804 overlap by 4 nucleotides PP_3804 and PP_3805 are separated by 83 nucleotides PP_3805 and PP_3806 are separated by 26 nucleotides PP_3806 and PP_3807 are separated by 56 nucleotides
PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200
_3803
PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060
_3804
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
PP_3806: PP_3806 - Hydrolase, isochorismatase family, at 4,334,223 to 4,334,774
_3806
PP_3807: PP_3807 - Thioesterase, at 4,334,831 to 4,335,550
_3807
Position (kb) 4333
4334
4335 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.794 kb on + strand, within PP_3804 at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.018 kb on - strand at 4333.166 kb on + strand at 4333.167 kb on - strand at 4333.372 kb on - strand, within PP_3805 at 4333.372 kb on - strand, within PP_3805 at 4333.554 kb on - strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.569 kb on - strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.661 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4334.102 kb on - strand at 4334.245 kb on + strand at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.575 kb on - strand, within PP_3806 at 4334.801 kb on + strand at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 4,332,578 + PP_3804 0.44 -1.6 4,332,578 + PP_3804 0.44 -1.8 4,332,578 + PP_3804 0.44 +0.4 4,332,578 + PP_3804 0.44 -2.0 4,332,578 + PP_3804 0.44 -0.9 4,332,578 + PP_3804 0.44 +0.6 4,332,578 + PP_3804 0.44 +0.4 4,332,579 - PP_3804 0.44 -0.9 4,332,579 - PP_3804 0.44 -1.7 4,332,588 - PP_3804 0.45 +1.7 4,332,588 - PP_3804 0.45 -2.6 4,332,794 + PP_3804 0.69 -0.2 4,333,017 + -1.8 4,333,017 + -4.4 4,333,017 + -3.2 4,333,018 - -4.4 4,333,166 + -1.0 4,333,167 - -2.0 4,333,372 - PP_3805 0.22 +0.7 4,333,372 - PP_3805 0.22 -2.9 4,333,554 - PP_3805 0.39 -4.8 4,333,568 + PP_3805 0.40 +0.7 4,333,568 + PP_3805 0.40 +2.3 4,333,568 + PP_3805 0.40 +0.2 4,333,569 - PP_3805 0.40 +0.4 4,333,607 + PP_3805 0.44 -2.6 4,333,607 + PP_3805 0.44 -0.2 4,333,607 + PP_3805 0.44 +0.7 4,333,607 + PP_3805 0.44 +0.6 4,333,608 - PP_3805 0.44 -0.9 4,333,608 - PP_3805 0.44 -2.9 4,333,608 - PP_3805 0.44 +2.7 4,333,661 + PP_3805 0.49 -1.5 4,333,787 + PP_3805 0.61 +1.0 4,333,787 + PP_3805 0.61 -0.1 4,333,838 + PP_3805 0.66 -0.0 4,333,838 + PP_3805 0.66 +0.2 4,333,896 + PP_3805 0.71 -4.2 4,333,896 + PP_3805 0.71 -1.0 4,333,897 - PP_3805 0.72 +1.4 4,333,897 - PP_3805 0.72 -0.3 4,334,102 - -0.7 4,334,245 + -1.2 4,334,322 + PP_3806 0.18 +2.7 4,334,322 + PP_3806 0.18 +0.4 4,334,322 + PP_3806 0.18 +0.6 4,334,575 - PP_3806 0.64 -1.7 4,334,801 + +0.9 4,335,051 + PP_3807 0.31 -0.9 4,335,051 + PP_3807 0.31 -0.6 4,335,051 + PP_3807 0.31 +0.2 4,335,052 - PP_3807 0.31 -0.6 4,335,052 - PP_3807 0.31 -1.9
Or see this region's nucleotide sequence