Strain Fitness in Pseudomonas putida KT2440 around PP_3781

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,307,637	+		PP_3779	0.61	+0.2
4,307,637	+		PP_3779	0.61	+2.2
4,307,780	+		PP_3779	0.76	-0.5
4,307,780	+		PP_3779	0.76	+0.9
4,307,780	+		PP_3779	0.76	+1.9
4,307,781	-		PP_3779	0.76	+0.2
4,307,900	-		PP_3779	0.89	+1.0
4,307,972	-				+1.0
4,307,972	-				+0.4
4,307,977	+				+0.4
4,307,977	+				-3.4
4,307,977	+				+3.2
4,307,977	+				+0.9
4,307,978	-				+1.8
4,307,978	-				+0.0
4,307,978	-				-0.9
4,308,028	+				-0.3
4,308,109	+		PP_3780	0.11	-1.2
4,308,237	+				+1.2
4,308,237	+				+0.4
4,308,238	-				-2.8
4,308,238	-				-3.3
4,308,238	-				-0.6
4,308,239	+				-2.0
4,308,240	-				+0.4
4,308,336	+				+0.1
4,308,337	-				-0.5
4,308,337	-				-2.6
4,308,668	+				-1.8
4,308,767	+		PP_3781	0.12	+4.1
4,308,823	+		PP_3781	0.16	+2.1
4,308,910	+		PP_3781	0.22	+0.4
4,308,910	+		PP_3781	0.22	+0.2
4,308,911	-		PP_3781	0.22	-3.8
4,308,911	-		PP_3781	0.22	+0.4
4,308,939	+		PP_3781	0.24	+0.9
4,308,943	+		PP_3781	0.25	+2.5
4,308,943	+		PP_3781	0.25	+0.5
4,308,943	+		PP_3781	0.25	+2.4
4,308,943	-		PP_3781	0.25	+0.2
4,308,944	-		PP_3781	0.25	-0.0
4,308,944	-		PP_3781	0.25	+0.2
4,308,944	-		PP_3781	0.25	+2.2
4,308,959	+		PP_3781	0.26	-1.1
4,308,960	-		PP_3781	0.26	+0.2
4,309,273	-		PP_3781	0.48	+0.8
4,309,286	+		PP_3781	0.49	+0.6
4,309,286	+		PP_3781	0.49	-0.2
4,309,286	+		PP_3781	0.49	-2.2
4,309,286	+		PP_3781	0.49	-0.3
4,309,286	+		PP_3781	0.49	+1.1
4,309,286	+		PP_3781	0.49	-0.1
4,309,287	-		PP_3781	0.49	-2.2
4,309,287	-		PP_3781	0.49	+0.4
4,309,287	-		PP_3781	0.49	+0.6
4,309,287	-				+0.4
4,309,287	-		PP_3781	0.49	+1.7
4,309,288	+		PP_3781	0.49	+3.9
4,309,288	+		PP_3781	0.49	-1.6
4,309,288	+		PP_3781	0.49	+0.8
4,309,289	-		PP_3781	0.49	-2.4
4,309,289	-		PP_3781	0.49	-0.3
4,309,373	-		PP_3781	0.55	-0.4
4,309,385	+		PP_3781	0.56	+0.8
4,309,405	+		PP_3781	0.57	+1.6
4,309,447	+		PP_3781	0.60	+0.4
4,309,465	+		PP_3781	0.61	+0.2
4,309,466	-		PP_3781	0.62	+3.7
4,309,530	+		PP_3781	0.66	-0.4
4,309,530	+		PP_3781	0.66	+1.3
4,309,531	-		PP_3781	0.66	-0.3
4,309,587	+		PP_3781	0.70	+1.0
4,309,587	+		PP_3781	0.70	+1.0
4,309,587	+		PP_3781	0.70	+0.4
4,309,601	-		PP_3781	0.71	+3.7
4,309,765	+		PP_3781	0.83	+0.4
4,309,765	+		PP_3781	0.83	+2.1
4,309,766	-		PP_3781	0.83	-0.0
4,309,766	-		PP_3781	0.83	+0.0
4,309,766	-		PP_3781	0.83	-0.1
4,309,766	-		PP_3781	0.83	+0.4
4,309,821	-		PP_3781	0.87	+0.0
4,309,978	-				-1.7
4,309,987	-				-0.3
4,310,065	+		PP_3782	0.12	-0.4
4,310,065	+		PP_3782	0.12	+3.9
4,310,066	-		PP_3782	0.12	-0.6
4,310,066	-		PP_3782	0.12	-0.2
4,310,068	+		PP_3782	0.13	-3.3
4,310,069	-		PP_3782	0.13	-1.5
4,310,069	-		PP_3782	0.13	+0.4
4,310,093	-		PP_3782	0.23	-1.5
4,310,143	+		PP_3782	0.44	+0.3
4,310,168	+		PP_3782	0.55	-3.4
4,310,168	+		PP_3782	0.55	+0.8
4,310,169	-		PP_3782	0.55	-1.3
4,310,169	-		PP_3782	0.55	+1.3
4,310,287	+				-3.2
4,310,352	+				-1.4
4,310,352	+				+0.4
4,310,353	-				-2.2
4,310,353	-				+0.2
4,310,353	-				-3.0
4,310,356	+				-0.1
4,310,356	+				+1.0
4,310,356	+				+0.4
4,310,357	-				+0.4
4,310,373	+				+0.8
4,310,374	-				+0.2
4,310,374	-				-3.5
4,310,484	+		PP_3783	0.21	-0.3
4,310,484	+		PP_3783	0.21	+0.0
4,310,743	+		PP_3783	0.49	-2.3
4,310,743	+		PP_3783	0.49	-0.3
4,310,799	+		PP_3783	0.54	-0.3
4,310,799	+		PP_3783	0.54	+0.3
4,310,800	-		PP_3783	0.55	-1.1
4,310,874	+		PP_3783	0.62	+0.3
4,310,874	+		PP_3783	0.62	+1.4
4,310,874	+		PP_3783	0.62	-1.2
4,310,874	+		PP_3783	0.62	+1.4
4,310,875	-		PP_3783	0.63	-1.0
4,310,875	-		PP_3783	0.63	+1.5
4,310,875	-		PP_3783	0.63	-1.2
4,310,875	-		PP_3783	0.63	-0.1
4,310,875	-		PP_3783	0.63	-4.4
4,310,875	-		PP_3783	0.63	-3.9
4,310,875	-		PP_3783	0.63	+0.4
4,310,881	-		PP_3783	0.63	-0.0
4,310,903	-		PP_3783	0.66	-1.8
4,310,940	+		PP_3783	0.70	+0.9
4,310,940	+		PP_3783	0.70	+4.6
4,310,941	-		PP_3783	0.70	-0.2
4,310,941	-		PP_3783	0.70	+1.8
4,310,941	-		PP_3783	0.70	+2.2
4,310,941	-		PP_3783	0.70	-1.4