Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3747 and PP_3748 overlap by 8 nucleotides PP_3748 and PP_3749 are separated by 139 nucleotides PP_3749 and PP_3750 are separated by 91 nucleotides
PP_3747: PP_3747 - glycolate oxidase, iron-sulfur subunit, at 4,276,605 to 4,277,840
_3747
PP_3748: PP_3748 - conserved hypothetical protein, at 4,277,833 to 4,278,231
_3748
PP_3749: PP_3749 - conserved protein of unknown function, at 4,278,371 to 4,278,709
_3749
PP_3750: PP_3750 - Transcriptional regulator, GntR family, at 4,278,801 to 4,280,234
_3750
Position (kb) 4277
4278
4279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4276.875 kb on + strand, within PP_3747 at 4276.876 kb on - strand, within PP_3747 at 4277.033 kb on - strand, within PP_3747 at 4277.157 kb on - strand, within PP_3747 at 4277.292 kb on - strand, within PP_3747 at 4277.333 kb on + strand, within PP_3747 at 4277.376 kb on + strand, within PP_3747 at 4277.407 kb on - strand, within PP_3747 at 4277.407 kb on - strand, within PP_3747 at 4277.643 kb on + strand, within PP_3747 at 4277.643 kb on + strand, within PP_3747 at 4277.677 kb on + strand, within PP_3747 at 4277.677 kb on + strand, within PP_3747 at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.838 kb on + strand at 4277.838 kb on + strand at 4277.998 kb on + strand, within PP_3748 at 4277.998 kb on + strand, within PP_3748 at 4278.170 kb on + strand, within PP_3748 at 4278.171 kb on - strand, within PP_3748 at 4278.229 kb on + strand at 4278.229 kb on + strand at 4278.230 kb on - strand at 4278.262 kb on + strand at 4278.262 kb on + strand at 4278.262 kb on + strand at 4278.263 kb on - strand at 4278.263 kb on - strand at 4278.263 kb on - strand at 4278.297 kb on - strand at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.680 kb on + strand at 4278.680 kb on + strand at 4278.680 kb on + strand at 4278.681 kb on - strand at 4278.681 kb on - strand at 4278.682 kb on + strand at 4278.683 kb on - strand at 4278.683 kb on - strand at 4278.683 kb on - strand at 4278.852 kb on + strand at 4278.984 kb on + strand, within PP_3750 at 4278.984 kb on + strand, within PP_3750 at 4278.985 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 4,276,875 + PP_3747 0.22 +0.7 4,276,876 - PP_3747 0.22 +0.5 4,277,033 - PP_3747 0.35 +1.3 4,277,157 - PP_3747 0.45 -2.6 4,277,292 - PP_3747 0.56 +1.6 4,277,333 + PP_3747 0.59 +1.4 4,277,376 + PP_3747 0.62 +0.6 4,277,407 - PP_3747 0.65 +1.3 4,277,407 - PP_3747 0.65 +3.3 4,277,643 + PP_3747 0.84 -0.9 4,277,643 + PP_3747 0.84 +3.0 4,277,677 + PP_3747 0.87 +1.0 4,277,677 + PP_3747 0.87 -0.8 4,277,740 + -1.4 4,277,740 + +0.4 4,277,740 + +2.5 4,277,740 + -2.6 4,277,741 - +0.7 4,277,741 - -2.9 4,277,741 - +2.2 4,277,741 - +2.5 4,277,838 + -0.2 4,277,838 + +0.5 4,277,998 + PP_3748 0.41 -1.0 4,277,998 + PP_3748 0.41 +2.4 4,278,170 + PP_3748 0.84 -3.0 4,278,171 - PP_3748 0.85 -1.8 4,278,229 + -2.9 4,278,229 + -3.0 4,278,230 - -0.0 4,278,262 + +0.4 4,278,262 + -0.4 4,278,262 + +0.4 4,278,263 - -2.3 4,278,263 - -0.6 4,278,263 - +1.6 4,278,297 - +0.4 4,278,583 + PP_3749 0.63 -0.6 4,278,583 + PP_3749 0.63 +0.9 4,278,583 + PP_3749 0.63 +2.2 4,278,583 + PP_3749 0.63 -0.6 4,278,584 - PP_3749 0.63 -1.2 4,278,584 - PP_3749 0.63 -3.0 4,278,584 - PP_3749 0.63 +3.4 4,278,584 - PP_3749 0.63 +1.2 4,278,584 - PP_3749 0.63 +1.5 4,278,584 - PP_3749 0.63 -3.0 4,278,680 + -0.1 4,278,680 + -1.2 4,278,680 + +0.1 4,278,681 - -0.3 4,278,681 - +0.3 4,278,682 + +0.3 4,278,683 - -0.7 4,278,683 - +2.1 4,278,683 - -0.3 4,278,852 + +0.9 4,278,984 + PP_3750 0.13 +0.4 4,278,984 + PP_3750 0.13 -0.9 4,278,985 - PP_3750 0.13 -2.0 4,279,225 - PP_3750 0.30 +0.8 4,279,225 - PP_3750 0.30 +0.7 4,279,225 - PP_3750 0.30 -0.1
Or see this region's nucleotide sequence