Strain Fitness in Pseudomonas putida KT2440 around PP_3664

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
4,161,239	+		PP_3663	0.37	-2.5
4,161,240	-		PP_3663	0.37	+1.0
4,161,301	+		PP_3663	0.42	-3.4
4,161,301	+		PP_3663	0.42	-2.2
4,161,302	-		PP_3663	0.42	+0.8
4,161,302	-		PP_3663	0.42	+0.4
4,161,440	+		PP_3663	0.53	-3.2
4,161,440	+		PP_3663	0.53	+0.4
4,161,440	+		PP_3663	0.53	+0.4
4,161,440	+		PP_3663	0.53	+0.1
4,161,440	+		PP_3663	0.53	+2.4
4,161,441	-		PP_3663	0.53	-0.9
4,161,467	+		PP_3663	0.55	-3.2
4,161,468	-		PP_3663	0.55	-3.5
4,161,468	-		PP_3663	0.55	-1.2
4,161,468	-		PP_3663	0.55	+0.7
4,161,732	+		PP_3663	0.75	+0.2
4,161,777	+		PP_3663	0.78	-0.1
4,161,777	+		PP_3663	0.78	-1.9
4,161,778	-		PP_3663	0.79	-0.3
4,161,778	-		PP_3663	0.79	-1.4
4,161,778	-		PP_3663	0.79	+0.4
4,161,813	-		PP_3663	0.81	-1.6
4,161,813	-		PP_3663	0.81	-3.9
4,161,857	+		PP_3663	0.85	+0.5
4,161,858	-		PP_3663	0.85	-1.2
4,161,891	+		PP_3663	0.87	-1.9
4,161,891	+		PP_3663	0.87	-2.2
4,161,914	-		PP_3663	0.89	+0.1
4,161,914	-		PP_3663	0.89	+0.2
4,161,921	+		PP_3663	0.90	-0.6
4,161,921	+		PP_3663	0.90	+0.2
4,161,922	-		PP_3663	0.90	-3.8
4,161,922	-		PP_3663	0.90	+1.8
4,161,923	+		PP_3663	0.90	+0.4
4,161,923	+		PP_3663	0.90	-1.2
4,161,923	+		PP_3663	0.90	+1.2
4,161,924	-		PP_3663	0.90	-1.9
4,161,964	+				-0.9
4,161,965	-				+0.4
4,161,965	-				+0.1
4,161,965	-				-3.9
4,162,016	+				-1.8
4,162,017	-				+1.5
4,162,017	-				+4.5
4,162,052	-				+0.9
4,162,057	-				-0.3
4,162,122	+				+0.1
4,162,122	+				-2.9
4,162,123	-				+1.5
4,162,171	-				-0.3
4,162,265	+				-0.2
4,162,265	+				-0.6
4,162,265	+				-0.2
4,162,266	-		PP_3664	0.10	+0.2
4,162,266	-		PP_3664	0.10	+0.1
4,162,266	-		PP_3664	0.10	-0.6
4,162,266	-		PP_3664	0.10	-0.7
4,162,266	-				-0.9
4,162,427	-		PP_3664	0.22	-2.3
4,162,427	-		PP_3664	0.22	-0.2
4,162,427	-		PP_3664	0.22	-1.1
4,162,451	+		PP_3664	0.24	+5.0
4,162,452	-		PP_3664	0.24	-0.1
4,162,452	-		PP_3664	0.24	+1.1
4,162,519	-		PP_3664	0.29	+3.3
4,162,519	-		PP_3664	0.29	-0.2
4,162,524	+		PP_3664	0.29	-0.5
4,162,524	+		PP_3664	0.29	-2.1
4,162,524	+		PP_3664	0.29	-1.9
4,162,524	+		PP_3664	0.29	-0.4
4,162,525	-		PP_3664	0.29	-0.5
4,162,525	-				+0.4
4,162,569	+		PP_3664	0.33	-0.3
4,162,570	-		PP_3664	0.33	+0.6
4,162,570	-		PP_3664	0.33	-1.5
4,162,570	-		PP_3664	0.33	-0.2
4,162,672	-		PP_3664	0.41	+3.5
4,162,678	+		PP_3664	0.41	-1.1
4,162,678	+		PP_3664	0.41	-0.6
4,162,678	+		PP_3664	0.41	+1.4
4,162,810	-		PP_3664	0.51	-3.3
4,162,868	-		PP_3664	0.55	-0.8
4,162,906	+		PP_3664	0.58	+0.2
4,162,974	+		PP_3664	0.63	-0.0
4,163,010	+		PP_3664	0.66	+1.0
4,163,011	-		PP_3664	0.66	-1.3
4,163,037	+		PP_3664	0.68	-1.6
4,163,038	-				-0.4
4,163,157	+		PP_3664	0.77	-2.9
4,163,268	+		PP_3664	0.85	-1.5
4,163,269	-		PP_3664	0.85	-0.2
4,163,313	+		PP_3664	0.89	-0.0
4,163,314	-		PP_3664	0.89	-0.2
4,163,314	-		PP_3664	0.89	-3.5
4,163,376	+				-0.2
4,163,540	+				+3.2
4,163,540	+				-3.5
4,163,541	-				-1.4
4,163,541	-				+2.0
4,163,564	+				-2.6
4,163,679	-				-0.1
4,163,679	-				+1.3
4,163,679	-				-0.5
4,163,802	+		PP_3665	0.16	+1.3
4,163,803	-		PP_3665	0.16	+0.2
4,163,803	-		PP_3665	0.16	+0.7
4,163,874	+		PP_3665	0.23	+0.0
4,163,874	+				+0.4
4,163,875	-		PP_3665	0.23	+0.5
4,163,945	+		PP_3665	0.30	-2.7
4,164,009	-		PP_3665	0.36	+0.7
4,164,020	+		PP_3665	0.37	-2.0
4,164,024	+		PP_3665	0.38	+0.4
4,164,024	+		PP_3665	0.38	+3.1
4,164,025	-		PP_3665	0.38	-0.8
4,164,156	+		PP_3665	0.51	-0.1
4,164,157	-		PP_3665	0.51	-0.9
4,164,450	+		PP_3665	0.80	+0.3
4,164,451	-		PP_3665	0.80	-1.6
4,164,451	-		PP_3665	0.80	+0.3
4,164,451	-		PP_3665	0.80	+0.0