Strain Fitness in Pseudomonas putida KT2440 around PP_3421

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,871,698	+		PP_3420	0.54	+1.6
3,871,699	-		PP_3420	0.54	-3.1
3,871,761	-		PP_3420	0.59	+0.4
3,871,761	-		PP_3420	0.59	-0.1
3,871,794	+		PP_3420	0.61	+0.9
3,871,812	+		PP_3420	0.62	-0.2
3,871,813	-		PP_3420	0.62	-0.3
3,871,813	-		PP_3420	0.62	+0.2
3,871,867	-		PP_3420	0.66	-0.3
3,871,867	-		PP_3420	0.66	+0.4
3,871,984	-		PP_3420	0.73	+0.1
3,871,984	-		PP_3420	0.73	-3.1
3,872,261	-				-1.5
3,872,403	+				-2.9
3,872,447	-				+3.0
3,872,585	-				-0.5
3,872,596	+				+0.0
3,872,843	+		PP_3421	0.11	+0.1
3,872,916	+		PP_3421	0.16	-0.8
3,872,916	+		PP_3421	0.16	+1.7
3,872,917	-		PP_3421	0.16	+3.4
3,872,978	+		PP_3421	0.20	-2.1
3,872,979	-		PP_3421	0.20	+0.1
3,872,985	+		PP_3421	0.20	+0.7
3,872,985	+		PP_3421	0.20	-3.9
3,873,031	-		PP_3421	0.24	+3.5
3,873,052	-		PP_3421	0.25	+1.8
3,873,079	+		PP_3421	0.27	+0.4
3,873,079	+		PP_3421	0.27	+0.4
3,873,080	-		PP_3421	0.27	+0.1
3,873,080	-		PP_3421	0.27	+2.5
3,873,080	-		PP_3421	0.27	+1.4
3,873,126	+		PP_3421	0.30	-0.3
3,873,203	+		PP_3421	0.35	-0.6
3,873,203	+		PP_3421	0.35	+0.5
3,873,293	+		PP_3421	0.42	-0.9
3,873,412	+		PP_3421	0.50	-2.8
3,873,474	+		PP_3421	0.54	+0.9
3,873,475	-		PP_3421	0.54	+1.6
3,873,475	-		PP_3421	0.54	+5.0
3,873,475	-		PP_3421	0.54	-2.0
3,873,475	-		PP_3421	0.54	+0.3
3,873,499	+		PP_3421	0.56	+0.7
3,873,553	+		PP_3421	0.60	-0.5
3,873,554	-		PP_3421	0.60	-2.0
3,873,649	+		PP_3421	0.66	-1.0
3,873,650	-		PP_3421	0.66	+3.5
3,873,742	+		PP_3421	0.73	-0.8
3,873,743	-		PP_3421	0.73	+0.4
3,873,743	-		PP_3421	0.73	-2.4
3,873,746	+		PP_3421	0.73	-0.6
3,873,762	-		PP_3421	0.74	-2.0
3,873,780	-		PP_3421	0.75	+0.9
3,873,839	+		PP_3421	0.79	+1.1
3,873,839	+		PP_3421	0.79	-1.4
3,873,839	+		PP_3421	0.79	-0.1
3,873,840	-		PP_3421	0.79	-2.2
3,873,930	-		PP_3421	0.86	+0.5
3,873,948	+		PP_3421	0.87	+0.4
3,874,049	-				-0.1
3,874,173	+				+0.7
3,874,173	+				-0.4
3,874,176	-				+1.4
3,874,196	+				-0.0
3,874,197	+				+1.5
3,874,198	-				+0.4
3,874,204	-				-4.5
3,874,261	+				+0.0
3,874,262	-				-0.4
3,874,316	-				-3.2
3,874,379	-		PP_3422	0.11	-1.3
3,874,379	-		PP_3422	0.11	-0.9
3,874,379	-		PP_3422	0.11	+0.9
3,874,445	-		PP_3422	0.22	+1.0
3,874,445	-		PP_3422	0.22	+0.5
3,874,501	+		PP_3422	0.31	-0.9
3,874,502	-		PP_3422	0.32	-2.0
3,874,502	-				-2.8
3,874,628	-		PP_3422	0.53	+1.4
3,874,701	+		PP_3422	0.65	+0.6
3,874,712	-		PP_3422	0.67	+1.2
3,874,783	+		PP_3422	0.79	-0.8
3,874,784	-		PP_3422	0.79	+0.4
3,874,784	-		PP_3422	0.79	+1.3
3,874,784	-		PP_3422	0.79	-3.4
3,874,784	-		PP_3422	0.79	-1.8
3,874,784	-		PP_3422	0.79	+0.8
3,874,784	-		PP_3422	0.79	+0.7
3,874,784	-		PP_3422	0.79	-1.4
3,874,784	-		PP_3422	0.79	-0.3
3,874,785	-		PP_3422	0.79	+0.2
3,874,815	+		PP_3422	0.84	-1.1
3,874,815	+		PP_3422	0.84	+1.8
3,874,816	-		PP_3422	0.85	+0.4
3,874,816	-		PP_3422	0.85	+1.2
3,874,819	+		PP_3422	0.85	-2.2
3,874,820	-		PP_3422	0.85	-0.1
3,874,846	+		PP_3422	0.90	-4.2
3,874,846	+		PP_3422	0.90	-3.6
3,874,846	+		PP_3422	0.90	-0.1
3,874,846	+		PP_3422	0.90	+0.5
3,874,846	+		PP_3422	0.90	+0.5
3,874,846	+		PP_3422	0.90	-0.3
3,874,847	-		PP_3422	0.90	-3.5
3,874,893	-				-3.1