Strain Fitness in Pseudomonas putida KT2440 around PP_3293

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,726,593	+				-0.8
3,726,593	+				+1.9
3,726,594	-				+0.2
3,726,594	-				+0.3
3,726,594	-				+1.1
3,726,594	-				-1.2
3,726,784	-				+1.6
3,726,784	-				+0.0
3,726,803	-				+0.2
3,726,858	+		PP_3292	0.11	-1.0
3,726,858	+		PP_3292	0.11	+1.1
3,726,859	-		PP_3292	0.11	+0.1
3,726,874	-		PP_3292	0.13	+2.4
3,727,214	-		PP_3292	0.66	+0.6
3,727,214	-		PP_3292	0.66	-1.5
3,727,215	+		PP_3292	0.66	-3.2
3,727,215	+		PP_3292	0.66	+0.6
3,727,215	+		PP_3292	0.66	-0.8
3,727,216	-				-0.6
3,727,216	-		PP_3292	0.66	-0.6
3,727,493	+				+2.6
3,727,589	+		PP_3293	0.23	+1.1
3,727,635	+		PP_3293	0.34	-3.0
3,727,636	-		PP_3293	0.34	-0.8
3,727,637	+		PP_3293	0.34	+1.7
3,727,637	+		PP_3293	0.34	+0.7
3,727,638	-		PP_3293	0.34	+0.3
3,727,638	-		PP_3293	0.34	+1.5
3,727,638	-		PP_3293	0.34	+3.2
3,727,638	-		PP_3293	0.34	-0.6
3,727,638	-		PP_3293	0.34	-1.0
3,727,638	-		PP_3293	0.34	+1.0
3,727,638	-		PP_3293	0.34	+1.7
3,727,727	+		PP_3293	0.55	-0.6
3,727,727	+		PP_3293	0.55	+0.9
3,727,728	-		PP_3293	0.55	+1.1
3,727,728	-		PP_3293	0.55	+0.9
3,727,730	+		PP_3293	0.56	+3.2
3,727,730	+		PP_3293	0.56	+0.1
3,727,730	+		PP_3293	0.56	-0.3
3,727,859	+		PP_3293	0.86	-2.2
3,727,978	+				+2.1
3,727,978	+				-1.4
3,727,979	-				-1.6
3,728,006	-				-2.6
3,728,019	+				-2.3
3,728,019	+				-2.6
3,728,019	+				+0.6
3,728,019	+				+1.0
3,728,019	+				+0.8
3,728,020	-				+0.8
3,728,053	+				+1.7
3,728,053	+				-0.7
3,728,054	-				-1.2
3,728,054	-				+0.8
3,728,057	+				-0.8
3,728,057	+				-2.1
3,728,058	-				-1.4
3,728,087	-				+1.7
3,728,125	+				+2.7
3,728,125	+				+0.2
3,728,126	-				+3.2
3,728,157	-				-0.8
3,728,236	+		PP_3294	0.12	+0.5
3,728,236	+		PP_3294	0.12	-0.0
3,728,237	-		PP_3294	0.12	-0.6
3,728,260	+		PP_3294	0.15	+1.2
3,728,552	-		PP_3294	0.47	-0.4
3,728,706	+		PP_3294	0.65	+0.2
3,728,768	-		PP_3294	0.72	-1.4
3,728,874	+		PP_3294	0.84	-0.4
3,728,875	-		PP_3294	0.84	+1.2