Strain Fitness in Pseudomonas putida KT2440 around PP_3208

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,639,848	+		PP_3206	0.87	-2.1
3,639,849	-		PP_3206	0.87	+0.7
3,639,908	+				+0.4
3,639,970	+				-1.1
3,640,028	+				-1.1
3,640,064	+		PP_3207	0.12	+0.1
3,640,064	+		PP_3207	0.12	-3.2
3,640,065	-		PP_3207	0.12	+0.7
3,640,065	-		PP_3207	0.12	-1.2
3,640,066	+		PP_3207	0.12	-0.4
3,640,066	+		PP_3207	0.12	+2.8
3,640,066	+		PP_3207	0.12	-1.0
3,640,067	-		PP_3207	0.12	-0.3
3,640,067	-		PP_3207	0.12	-1.9
3,640,067	-		PP_3207	0.12	+0.0
3,640,211	+		PP_3207	0.31	-1.5
3,640,212	-		PP_3207	0.31	-0.4
3,640,439	+		PP_3207	0.60	-3.2
3,640,481	+		PP_3207	0.65	-0.8
3,640,482	-		PP_3207	0.65	+1.4
3,640,684	-				+0.8
3,640,697	+				+0.4
3,640,697	+				+0.5
3,640,698	-				-2.2
3,640,922	-				+0.4
3,640,922	-				-0.6
3,640,980	-		PP_3208	0.16	+0.4
3,641,002	-		PP_3208	0.18	+0.4
3,641,079	+		PP_3208	0.26	-0.6
3,641,221	+		PP_3208	0.41	+1.7
3,641,221	+		PP_3208	0.41	+0.2
3,641,221	+		PP_3208	0.41	+0.4
3,641,222	-		PP_3208	0.41	+3.9
3,641,404	+		PP_3208	0.60	-0.9
3,641,404	+		PP_3208	0.60	+0.1
3,641,405	-		PP_3208	0.61	-1.2
3,641,431	-		PP_3208	0.63	+1.5
3,641,477	+		PP_3208	0.68	+0.4
3,641,585	-		PP_3208	0.80	-2.0
3,641,586	+		PP_3208	0.80	-0.6
3,641,586	+		PP_3208	0.80	+2.0
3,641,586	+		PP_3208	0.80	-3.2
3,641,586	+		PP_3208	0.80	+1.4
3,641,586	+		PP_3208	0.80	+0.4
3,641,586	+		PP_3208	0.80	-2.4
3,641,586	+				-0.2
3,641,586	+		PP_3208	0.80	-0.1
3,641,587	-		PP_3208	0.80	-2.0
3,641,587	-		PP_3208	0.80	-2.2
3,641,587	-		PP_3208	0.80	-1.6
3,641,587	-		PP_3208	0.80	+1.1
3,641,620	+		PP_3208	0.83	+0.7
3,641,811	-				-1.4
3,641,811	-				-1.0
3,641,811	-				+3.5
3,642,272	+				+0.4
3,642,274	+		PP_3209	0.35	+0.8
3,642,275	-		PP_3209	0.35	+0.0
3,642,624	+		PP_3209	0.59	+1.3
3,642,624	+		PP_3209	0.59	-0.3
3,642,625	-		PP_3209	0.59	-0.2
3,642,633	-		PP_3209	0.60	-0.2
3,642,707	+		PP_3209	0.65	+0.1
3,642,707	+		PP_3209	0.65	+1.2
3,642,707	+		PP_3209	0.65	+0.4