Strain Fitness in Pseudomonas putida KT2440 around PP_3175

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,597,211	+		PP_3174	0.11	+0.1
3,597,237	+		PP_3174	0.13	+3.0
3,597,237	+		PP_3174	0.13	+0.4
3,597,238	-		PP_3174	0.14	+0.7
3,597,238	-		PP_3174	0.14	+1.0
3,597,238	-				+0.4
3,597,241	+		PP_3174	0.14	+0.5
3,597,242	-		PP_3174	0.14	+0.4
3,597,351	+		PP_3174	0.25	+0.2
3,597,351	+		PP_3174	0.25	-0.5
3,597,351	+		PP_3174	0.25	+0.2
3,597,352	-		PP_3174	0.25	+1.4
3,597,465	+		PP_3174	0.36	+0.7
3,597,465	+		PP_3174	0.36	-0.0
3,597,466	-		PP_3174	0.36	+0.2
3,597,734	+				+0.0
3,597,759	+		PP_3174	0.65	+2.4
3,597,760	-		PP_3174	0.65	+0.2
3,597,762	+		PP_3174	0.65	-3.3
3,597,762	+		PP_3174	0.65	+1.8
3,597,762	+		PP_3174	0.65	+0.4
3,597,762	+		PP_3174	0.65	-1.1
3,597,763	-		PP_3174	0.65	+2.2
3,597,763	-		PP_3174	0.65	-0.2
3,597,763	-		PP_3174	0.65	-0.1
3,597,763	-		PP_3174	0.65	+5.4
3,597,763	-		PP_3174	0.65	-0.4
3,597,775	-		PP_3174	0.67	-0.4
3,597,954	+		PP_3174	0.84	+0.4
3,597,955	-		PP_3174	0.84	+0.6
3,597,955	-		PP_3174	0.84	+1.1
3,598,027	+				-2.6
3,598,063	+				-1.0
3,598,126	-				-2.0
3,598,142	+				+0.6
3,598,143	-				+0.1
3,598,151	+				+0.2
3,598,377	-		PP_3175	0.13	-0.5
3,598,386	+		PP_3175	0.13	-1.2
3,598,390	+		PP_3175	0.14	-1.5
3,598,390	+		PP_3175	0.14	-1.2
3,598,391	-		PP_3175	0.14	+0.4
3,598,405	-		PP_3175	0.15	+1.7
3,598,421	+		PP_3175	0.16	+5.2
3,598,421	+		PP_3175	0.16	-1.7
3,598,869	+		PP_3175	0.45	-2.1
3,599,036	-		PP_3175	0.56	-0.7
3,599,123	+		PP_3175	0.62	-3.2
3,599,123	+		PP_3175	0.62	+1.1
3,599,443	-		PP_3175	0.83	-2.2
3,599,543	+		PP_3175	0.89	-2.0
3,599,543	+		PP_3175	0.89	+0.4
3,599,544	-		PP_3175	0.89	+0.5
3,599,589	+				+2.2
3,599,589	+				+2.1
3,599,590	-				-0.2
3,599,590	-				+0.5
3,599,590	-				-0.4
3,599,597	+				+3.3
3,599,597	+				-0.9
3,599,695	-				+0.4
3,599,829	-				-0.4
3,599,936	+				-3.3
3,600,009	+		PP_3176	0.11	+1.0
3,600,038	+		PP_3176	0.13	-3.0
3,600,290	+		PP_3176	0.32	+1.3
3,600,291	-		PP_3176	0.32	+1.5
3,600,307	-				-1.2
3,600,387	+		PP_3176	0.39	-1.9
3,600,588	-		PP_3176	0.54	-1.9