Strain Fitness in Pseudomonas putida KT2440 around PP_3163

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,582,860	+		PP_3161	0.68	+0.7
3,582,936	-		PP_3161	0.74	-2.3
3,582,936	-		PP_3161	0.74	+1.7
3,582,936	-		PP_3161	0.74	+0.3
3,582,983	-		PP_3161	0.77	+1.7
3,582,992	+		PP_3161	0.78	-1.1
3,583,217	+				-0.7
3,583,218	-				-0.0
3,583,218	-				+2.9
3,583,294	+				+0.5
3,583,295	-				-2.0
3,583,295	-				+2.3
3,583,295	-				-1.4
3,583,295	-				-0.4
3,583,318	+				-2.7
3,583,319	-				+1.0
3,583,373	-		PP_3162	0.18	-3.5
3,583,633	+		PP_3162	0.72	+0.7
3,583,651	+		PP_3162	0.75	-0.8
3,583,651	+		PP_3162	0.75	+0.1
3,583,652	-		PP_3162	0.76	+1.2
3,583,652	-		PP_3162	0.76	-0.8
3,583,652	-		PP_3162	0.76	-1.2
3,583,652	-		PP_3162	0.76	-2.5
3,583,669	+		PP_3162	0.79	-0.8
3,583,669	+		PP_3162	0.79	-0.3
3,583,670	-		PP_3162	0.79	-1.9
3,583,735	+				+0.3
3,583,735	+				-0.7
3,583,736	-				+1.3
3,583,736	-				-0.5
3,583,759	+				-1.3
3,583,759	+				-0.7
3,583,759	+				-0.7
3,584,011	+		PP_3163	0.17	-2.7
3,584,072	-		PP_3163	0.23	+3.3
3,584,263	+		PP_3163	0.42	+0.0
3,584,264	-		PP_3163	0.42	-1.6
3,584,264	-		PP_3163	0.42	-1.5
3,584,306	-		PP_3163	0.46	-2.6
3,584,360	+		PP_3163	0.51	-0.8
3,584,446	+		PP_3163	0.60	-3.5
3,584,446	+		PP_3163	0.60	+0.8
3,584,446	+		PP_3163	0.60	-0.9
3,584,567	-		PP_3163	0.72	-0.0
3,584,629	-		PP_3163	0.78	-1.3
3,584,644	+		PP_3163	0.79	-4.5
3,584,692	+		PP_3163	0.84	-1.9
3,584,692	+		PP_3163	0.84	-4.9
3,584,692	+		PP_3163	0.84	+1.0
3,584,693	-		PP_3163	0.84	+2.3
3,584,693	-		PP_3163	0.84	+0.1
3,584,747	-		PP_3163	0.89	+0.1
3,584,747	-		PP_3163	0.89	-0.3
3,584,747	-		PP_3163	0.89	-1.1
3,584,747	-		PP_3163	0.89	-1.1
3,584,788	+				-2.2
3,584,788	+				+0.0
3,584,789	-				+0.9
3,584,809	-				-1.7
3,584,824	+				-2.5
3,584,825	-				-0.8
3,584,875	-				+0.3
3,584,983	+				-1.4
3,584,983	+				-3.4
3,584,984	-				+0.9
3,584,984	-				-0.6
3,584,984	-				-1.6
3,584,987	+				+2.9
3,584,988	-				+1.9
3,585,098	-		PP_3164	0.14	-1.7
3,585,354	+		PP_3164	0.48	-0.2
3,585,355	-		PP_3164	0.48	-0.4
3,585,355	-		PP_3164	0.48	-2.0
3,585,595	-		PP_3164	0.80	-1.2
3,585,851	+				+0.2
3,585,852	-				-0.6