Strain Fitness in Pseudomonas putida KT2440 around PP_3149

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,565,475	+		PP_3148	0.35	-1.2
3,565,475	+		PP_3148	0.35	-4.3
3,565,476	-		PP_3148	0.35	+0.6
3,565,476	-		PP_3148	0.35	-0.5
3,565,476	-		PP_3148	0.35	+0.4
3,565,764	+		PP_3148	0.56	-0.0
3,565,764	+		PP_3148	0.56	-0.5
3,565,799	+		PP_3148	0.58	+0.4
3,565,799	+		PP_3148	0.58	-2.0
3,565,799	+		PP_3148	0.58	+4.5
3,566,160	-		PP_3148	0.85	-3.3
3,566,160	-		PP_3148	0.85	+0.7
3,566,160	-		PP_3148	0.85	-1.9
3,566,160	-		PP_3148	0.85	-2.2
3,566,162	+		PP_3148	0.85	-0.1
3,566,162	+		PP_3148	0.85	+4.8
3,566,163	-		PP_3148	0.85	+0.7
3,566,163	-		PP_3148	0.85	-3.0
3,566,163	-		PP_3148	0.85	+2.1
3,566,163	-		PP_3148	0.85	+0.5
3,566,163	-		PP_3148	0.85	+0.0
3,566,181	-		PP_3148	0.86	+1.4
3,566,364	+				+0.3
3,566,365	-				+0.7
3,566,439	-				+0.4
3,566,467	-				+0.9
3,566,467	-				-1.1
3,566,467	-				+2.8
3,566,496	-				-0.0
3,566,496	-				-0.2
3,566,496	-				-1.2
3,566,707	+		PP_3149	0.29	-0.7
3,566,708	-		PP_3149	0.30	+2.2
3,566,708	-		PP_3149	0.30	-1.0
3,566,800	+		PP_3149	0.38	+2.1
3,566,801	-		PP_3149	0.38	+1.7
3,566,801	-		PP_3149	0.38	-4.5
3,566,827	-		PP_3149	0.41	-1.8
3,566,849	-		PP_3149	0.43	+0.2
3,566,849	-		PP_3149	0.43	-0.5
3,566,849	-		PP_3149	0.43	+1.4
3,566,849	-		PP_3149	0.43	+0.7
3,566,849	-		PP_3149	0.43	+1.3
3,567,249	+		PP_3149	0.81	+1.0
3,567,250	-		PP_3149	0.81	+1.5
3,567,392	-				-2.1
3,567,498	+				-0.1
3,567,538	-				-0.6
3,567,763	+		PP_3150	0.16	-1.2
3,567,764	-		PP_3150	0.16	+2.8
3,567,852	+		PP_3150	0.20	+1.3
3,567,853	-				+0.9
3,567,945	+		PP_3150	0.25	-0.5
3,568,179	+		PP_3150	0.37	+3.0
3,568,180	-		PP_3150	0.37	-0.9
3,568,180	-		PP_3150	0.37	+0.2
3,568,180	-		PP_3150	0.37	-2.6
3,568,367	+		PP_3150	0.46	+3.8