Strain Fitness in Pseudomonas putida KT2440 around PP_3032

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,417,582	+		PP_3030	0.43	+1.5
3,417,582	+		PP_3030	0.43	-2.3
3,417,582	+		PP_3030	0.43	-0.8
3,417,582	+		PP_3030	0.43	-0.4
3,417,583	-		PP_3030	0.43	+0.4
3,417,583	-		PP_3030	0.43	-0.8
3,417,583	-		PP_3030	0.43	-1.2
3,417,583	-		PP_3030	0.43	+0.2
3,417,608	+		PP_3030	0.46	-1.2
3,417,609	-		PP_3030	0.46	-0.1
3,417,609	-		PP_3030	0.46	-2.0
3,417,651	+		PP_3030	0.51	+0.4
3,417,651	+		PP_3030	0.51	+0.7
3,417,652	-		PP_3030	0.52	+2.0
3,417,697	-		PP_3030	0.57	-2.0
3,417,731	+		PP_3030	0.61	+0.2
3,417,731	+		PP_3030	0.61	+3.2
3,417,732	-		PP_3030	0.62	+0.4
3,417,732	-		PP_3030	0.62	+0.1
3,417,873	+		PP_3030	0.79	-0.3
3,417,873	+		PP_3030	0.79	-0.7
3,417,933	+		PP_3030	0.87	+1.1
3,417,933	+		PP_3030	0.87	-1.0
3,417,933	+		PP_3030	0.87	+0.2
3,417,933	+		PP_3030	0.87	+0.0
3,417,976	+				-0.7
3,417,976	+				-1.3
3,417,977	-				-0.9
3,417,977	-				-1.0
3,417,982	+				+0.8
3,417,983	-				+1.4
3,417,983	-				-3.3
3,417,993	+				-2.0
3,417,993	+				+0.4
3,418,047	+				-1.2
3,418,047	+				-0.2
3,418,047	+				+0.4
3,418,048	-				+0.2
3,418,048	-				-0.5
3,418,087	+				-0.2
3,418,088	-				-2.3
3,418,095	+				-0.6
3,418,143	+		PP_3031	0.15	+1.5
3,418,291	-		PP_3031	0.62	+0.4
3,418,402	+				+1.9
3,418,402	+				+0.4
3,418,402	+				-1.1
3,418,580	+				+0.5
3,418,673	+		PP_3032	0.35	-0.6
3,418,865	+				+1.5
3,418,880	-				-2.2
3,418,880	-				-1.0
3,418,882	+				+0.1
3,418,883	-				+0.4
3,418,883	-				-1.2
3,418,932	+		PP_5552	0.22	-1.0
3,419,137	-		PP_5552	0.88	+0.4
3,419,168	+				-0.4
3,419,195	-		PP_5553	0.13	-3.1
3,419,195	-		PP_5553	0.13	+4.8
3,419,228	+		PP_5553	0.32	-4.5
3,419,229	-		PP_5553	0.33	-2.4
3,419,241	-		PP_5553	0.40	+1.8
3,419,241	-		PP_5553	0.40	-1.1
3,419,241	-		PP_5553	0.40	+0.4
3,419,292	+		PP_5553	0.69	+0.0
3,419,325	+		PP_5553	0.88	+2.4
3,419,325	+		PP_5553	0.88	+0.2
3,419,325	+		PP_5553	0.88	-0.3
3,419,325	+				+1.0
3,419,325	+		PP_5553	0.88	-2.0
3,419,326	-		PP_5553	0.89	-0.8
3,419,326	-				+1.4
3,419,326	-		PP_5553	0.89	-4.3
3,419,326	-		PP_5553	0.89	-1.2
3,419,326	-		PP_5553	0.89	-0.5
3,419,348	+				-1.5
3,419,348	+				+0.6