Strain Fitness in Pseudomonas putida KT2440 around PP_3024

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,409,072	+		PP_3022	0.55	+0.3
3,409,072	+		PP_3022	0.55	+0.7
3,409,072	+		PP_3022	0.55	+0.9
3,409,072	+		PP_3022	0.55	+0.8
3,409,073	-		PP_3022	0.55	-3.6
3,409,073	-		PP_3022	0.55	-0.1
3,409,092	+		PP_3022	0.58	+0.4
3,409,093	-		PP_3022	0.58	+0.4
3,409,141	+		PP_3022	0.64	-2.8
3,409,142	-		PP_3022	0.64	-1.1
3,409,182	-		PP_3022	0.69	+3.7
3,409,240	+		PP_3022	0.76	-0.9
3,409,241	-		PP_3022	0.76	-0.2
3,409,349	+		PP_3022	0.89	-0.2
3,409,349	+		PP_3022	0.89	+0.4
3,409,349	+		PP_3022	0.89	-1.8
3,409,350	-		PP_3022	0.90	-1.6
3,409,435	+				-2.3
3,409,435	+				-0.9
3,409,436	-				-1.6
3,409,483	+				+0.4
3,409,506	-				-0.6
3,409,630	+				+0.4
3,409,630	+				+1.0
3,409,762	+				+4.2
3,409,772	+				-4.3
3,409,772	+				-1.2
3,409,773	-				-0.6
3,409,776	+				+2.2
3,409,776	+				+0.7
3,409,777	-				+4.4
3,409,777	-				-0.1
3,409,777	-				-1.6
3,409,777	-				-3.1
3,409,777	-				-0.1
3,409,777	-				-2.6
3,409,777	-				+0.6
3,409,808	+				+0.0
3,409,817	+				-0.8
3,409,817	+				-0.3
3,409,817	+				+0.4
3,409,946	+				-2.1
3,410,034	-				-1.0
3,410,064	-				-0.7
3,410,170	+		PP_3024	0.17	-0.6
3,410,170	+		PP_3024	0.17	+0.0
3,410,278	+		PP_3024	0.26	+1.5
3,410,419	+		PP_3024	0.38	-2.0
3,410,420	-		PP_3024	0.38	+0.4
3,410,420	-		PP_3024	0.38	-2.5
3,410,541	-		PP_3024	0.48	-2.0
3,410,731	+		PP_3024	0.64	-1.8
3,410,732	-		PP_3024	0.64	-0.5
3,410,793	+		PP_3024	0.69	-2.3
3,410,803	+		PP_3024	0.70	-1.3
3,410,804	-		PP_3024	0.70	-3.2
3,410,864	-		PP_3024	0.75	+0.7
3,411,058	+				-0.6
3,411,062	+				-0.4
3,411,062	+				-1.2
3,411,206	+				-2.0
3,411,757	-		PP_5551	0.51	+1.4
3,411,870	+		PP_5551	0.73	-1.8
3,411,871	-		PP_5551	0.73	-1.7
3,411,897	+		PP_5551	0.78	+0.7
3,411,898	-		PP_5551	0.78	+0.1
3,411,930	+		PP_5551	0.84	+1.1
3,411,931	-		PP_5551	0.85	-2.4
3,411,936	+		PP_5551	0.86	-0.3
3,411,952	-		PP_5551	0.89	+1.7
3,411,952	-		PP_5551	0.89	+3.8
3,411,984	+				+0.2
3,411,984	+				-0.6
3,412,015	+				-3.0
3,412,015	+				-1.8
3,412,068	-				-1.1
3,412,108	+				-0.6
3,412,108	+				+0.1
3,412,108	+				-1.0
3,412,109	-				+1.8
3,412,109	-				-3.3
3,412,109	-				-1.5
3,412,114	+				-0.6
3,412,132	+				-0.2
3,412,133	-				-1.4
3,412,166	-				+1.2