Strain Fitness in Pseudomonas putida KT2440 around PP_2975

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,375,180	-		PP_2974	0.45	+0.3
3,375,200	+		PP_2974	0.46	+1.7
3,375,279	+		PP_2974	0.51	-0.1
3,375,279	+		PP_2974	0.51	+3.5
3,375,279	+		PP_2974	0.51	-0.7
3,375,280	-		PP_2974	0.51	-1.2
3,375,569	+		PP_2974	0.68	-0.6
3,375,625	+		PP_2974	0.72	+1.2
3,375,625	+		PP_2974	0.72	-1.6
3,375,625	+		PP_2974	0.72	-0.6
3,375,650	+		PP_2974	0.73	-1.3
3,375,650	+		PP_2974	0.73	-0.1
3,375,650	+		PP_2974	0.73	+2.0
3,375,651	-		PP_2974	0.73	-1.6
3,375,651	-		PP_2974	0.73	-2.6
3,375,656	+		PP_2974	0.74	+0.4
3,375,731	-		PP_2974	0.78	-2.6
3,375,753	+		PP_2974	0.79	+0.9
3,375,754	-		PP_2974	0.79	+1.4
3,375,787	+		PP_2974	0.81	+0.3
3,375,787	+		PP_2974	0.81	+1.8
3,375,842	+		PP_2974	0.85	+0.9
3,375,842	+		PP_2974	0.85	-2.6
3,375,842	+		PP_2974	0.85	+2.8
3,375,843	-		PP_2974	0.85	-1.4
3,375,843	-		PP_2974	0.85	-0.0
3,375,843	-		PP_2974	0.85	+0.9
3,375,949	+				-1.0
3,375,949	+				+0.4
3,375,950	-				-2.5
3,375,998	-				+2.0
3,376,007	+				+0.3
3,376,008	-				-4.4
3,376,023	+				+0.4
3,376,023	+				-0.4
3,376,069	-				-1.6
3,376,092	-				-0.3
3,376,124	-				+0.4
3,376,137	-				+1.5
3,376,273	+		PP_2975	0.43	-0.1
3,376,273	+		PP_2975	0.43	-0.1
3,376,273	+		PP_2975	0.43	+0.4
3,376,273	+		PP_2975	0.43	+4.6
3,376,273	+		PP_2975	0.43	+1.9
3,376,273	+		PP_2975	0.43	-3.1
3,376,274	-		PP_2975	0.43	+0.5
3,376,274	-		PP_2975	0.43	-1.0
3,376,366	+		PP_2975	0.78	+0.0
3,376,367	-		PP_2975	0.78	+0.2
3,376,367	-		PP_2975	0.78	-1.6
3,376,367	-		PP_2975	0.78	-0.3
3,376,424	-				-1.5
3,376,490	-				-0.6
3,376,573	-				+2.4
3,376,623	+		PP_2976	0.16	+4.1
3,376,630	+		PP_2976	0.18	+1.3
3,376,987	+		PP_2977	0.12	-0.4
3,376,988	-		PP_2977	0.12	-0.7
3,377,070	+		PP_2977	0.21	-0.6
3,377,180	-		PP_2977	0.33	-0.2
3,377,328	+		PP_2977	0.49	+0.9
3,377,328	+		PP_2977	0.49	-0.7
3,377,329	-		PP_2977	0.49	+0.7
3,377,329	-		PP_2977	0.49	-1.2
3,377,364	-		PP_2977	0.53	+1.5
3,377,364	-		PP_2977	0.53	+0.3