Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2930 and PP_2931 overlap by 4 nucleotides PP_2931 and PP_2932 are separated by 52 nucleotides
PP_2930: PP_2930 - putative L-serine dehydratase, at 3,332,187 to 3,333,104
_2930
PP_2931: PP_2931 - conserved protein of unknown function, at 3,333,101 to 3,333,805
_2931
PP_2932: PP_2932 - Amidase family protein, at 3,333,858 to 3,335,561
_2932
Position (kb)
3333
3334 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3332.104 kb on - strand at 3332.135 kb on + strand at 3332.136 kb on - strand at 3332.139 kb on - strand at 3332.162 kb on + strand at 3332.162 kb on + strand at 3332.163 kb on - strand at 3332.293 kb on + strand, within PP_2930 at 3332.293 kb on + strand, within PP_2930 at 3332.293 kb on + strand, within PP_2930 at 3332.293 kb on + strand, within PP_2930 at 3332.293 kb on + strand, within PP_2930 at 3332.294 kb on - strand, within PP_2930 at 3332.294 kb on - strand, within PP_2930 at 3332.294 kb on - strand, within PP_2930 at 3332.294 kb on - strand, within PP_2930 at 3332.896 kb on + strand, within PP_2930 at 3332.983 kb on - strand, within PP_2930 at 3333.041 kb on + strand at 3333.041 kb on + strand at 3333.041 kb on + strand at 3333.042 kb on - strand at 3333.042 kb on - strand at 3333.119 kb on + strand at 3333.119 kb on + strand at 3333.119 kb on + strand at 3333.138 kb on + strand at 3333.138 kb on + strand at 3333.138 kb on + strand at 3333.138 kb on + strand at 3333.138 kb on + strand at 3333.139 kb on - strand at 3333.139 kb on - strand at 3333.139 kb on - strand at 3333.147 kb on + strand at 3333.148 kb on - strand at 3333.341 kb on + strand, within PP_2931 at 3333.342 kb on - strand, within PP_2931 at 3333.491 kb on - strand, within PP_2931 at 3333.491 kb on - strand, within PP_2931 at 3333.770 kb on - strand at 3333.853 kb on - strand at 3333.949 kb on + strand at 3333.984 kb on - strand at 3333.984 kb on - strand at 3334.285 kb on + strand, within PP_2932 at 3334.285 kb on + strand, within PP_2932 at 3334.285 kb on + strand, within PP_2932 at 3334.285 kb on + strand, within PP_2932 at 3334.286 kb on - strand, within PP_2932 at 3334.383 kb on - strand, within PP_2932 at 3334.383 kb on - strand, within PP_2932 at 3334.486 kb on + strand, within PP_2932 at 3334.551 kb on + strand, within PP_2932 at 3334.689 kb on + strand, within PP_2932 at 3334.689 kb on + strand, within PP_2932 at 3334.690 kb on - strand, within PP_2932 at 3334.690 kb on - strand, within PP_2932 at 3334.691 kb on + strand, within PP_2932 at 3334.692 kb on - strand, within PP_2932 at 3334.692 kb on - strand, within PP_2932 at 3334.693 kb on + strand, within PP_2932 at 3334.693 kb on + strand at 3334.693 kb on + strand, within PP_2932 at 3334.693 kb on + strand, within PP_2932 at 3334.693 kb on + strand, within PP_2932 at 3334.694 kb on - strand, within PP_2932 at 3334.694 kb on - strand, within PP_2932 at 3334.694 kb on - strand, within PP_2932 at 3334.771 kb on - strand, within PP_2932
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 3,332,104 - -3.0 3,332,135 + -1.1 3,332,136 - +0.2 3,332,139 - +0.3 3,332,162 + -0.3 3,332,162 + -0.4 3,332,163 - -0.1 3,332,293 + PP_2930 0.12 -1.1 3,332,293 + PP_2930 0.12 -0.3 3,332,293 + PP_2930 0.12 -2.7 3,332,293 + PP_2930 0.12 +1.2 3,332,293 + PP_2930 0.12 +0.3 3,332,294 - PP_2930 0.12 -0.7 3,332,294 - PP_2930 0.12 +2.7 3,332,294 - PP_2930 0.12 +2.9 3,332,294 - PP_2930 0.12 -1.4 3,332,896 + PP_2930 0.77 +0.3 3,332,983 - PP_2930 0.87 +0.6 3,333,041 + +1.9 3,333,041 + +0.8 3,333,041 + -0.2 3,333,042 - +1.5 3,333,042 - -1.2 3,333,119 + +0.0 3,333,119 + -1.5 3,333,119 + +3.5 3,333,138 + +1.1 3,333,138 + +0.3 3,333,138 + +1.3 3,333,138 + -0.0 3,333,138 + -3.2 3,333,139 - +1.2 3,333,139 - +1.6 3,333,139 - -1.5 3,333,147 + +2.3 3,333,148 - +0.8 3,333,341 + PP_2931 0.34 -0.7 3,333,342 - PP_2931 0.34 -1.2 3,333,491 - PP_2931 0.55 -4.5 3,333,491 - PP_2931 0.55 -1.4 3,333,770 - +0.6 3,333,853 - -3.0 3,333,949 + +2.3 3,333,984 - +2.2 3,333,984 - -0.8 3,334,285 + PP_2932 0.25 -1.2 3,334,285 + PP_2932 0.25 +2.7 3,334,285 + PP_2932 0.25 +0.7 3,334,285 + PP_2932 0.25 -1.2 3,334,286 - PP_2932 0.25 -3.6 3,334,383 - PP_2932 0.31 -0.9 3,334,383 - PP_2932 0.31 -0.4 3,334,486 + PP_2932 0.37 -3.7 3,334,551 + PP_2932 0.41 -1.0 3,334,689 + PP_2932 0.49 -0.5 3,334,689 + PP_2932 0.49 -1.2 3,334,690 - PP_2932 0.49 +0.2 3,334,690 - PP_2932 0.49 -1.6 3,334,691 + PP_2932 0.49 -4.0 3,334,692 - PP_2932 0.49 -0.5 3,334,692 - PP_2932 0.49 -3.1 3,334,693 + PP_2932 0.49 -0.4 3,334,693 + +0.3 3,334,693 + PP_2932 0.49 +0.8 3,334,693 + PP_2932 0.49 -2.7 3,334,693 + PP_2932 0.49 -3.9 3,334,694 - PP_2932 0.49 -4.0 3,334,694 - PP_2932 0.49 -1.7 3,334,694 - PP_2932 0.49 -3.8 3,334,771 - PP_2932 0.54 +4.0
Or see this region's nucleotide sequence