Strain Fitness in Pseudomonas putida KT2440 around PP_2895

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,294,048	-				-0.1
3,294,077	-				-1.6
3,294,088	+				-3.6
3,294,088	+				-0.9
3,294,089	-				-0.3
3,294,089	-				-0.3
3,294,235	+				+0.5
3,294,309	-				+2.4
3,294,309	-				-0.9
3,294,309	-				-0.4
3,294,329	+				+0.4
3,294,330	-				-0.2
3,294,375	-				-0.2
3,294,390	-				+0.5
3,294,499	+		PP_2894	0.16	-0.1
3,294,499	+		PP_2894	0.16	+1.1
3,294,499	+		PP_2894	0.16	+0.9
3,294,500	-		PP_2894	0.16	-0.2
3,294,500	-		PP_2894	0.16	-0.4
3,294,729	-		PP_2894	0.57	-3.3
3,294,862	+		PP_2894	0.81	-1.0
3,294,862	+		PP_2894	0.81	+1.0
3,295,042	+				+0.3
3,295,095	+				-1.6
3,295,238	+		PP_2895	0.31	-2.6
3,295,239	-		PP_2895	0.31	-0.8
3,295,374	-		PP_2895	0.52	-0.3
3,295,374	-		PP_2895	0.52	-1.0
3,295,377	+		PP_2895	0.52	-0.7
3,295,389	+		PP_2895	0.54	-0.0
3,295,389	+		PP_2895	0.54	+0.6
3,295,390	-		PP_2895	0.54	+0.1
3,295,548	+		PP_2895	0.79	-2.1
3,295,548	+		PP_2895	0.79	-3.0
3,295,549	-		PP_2895	0.79	-0.6
3,295,662	+				-2.8
3,295,663	-				-0.4
3,295,664	+				-0.4
3,295,664	+				+2.3
3,295,673	+				+1.4
3,295,673	+				-0.2
3,295,674	-				-2.7
3,295,703	-				+0.4
3,295,703	-				+0.3
3,295,706	+				-0.1
3,295,706	+				+1.0
3,295,707	-				+0.2
3,295,714	+				+0.4
3,295,714	+				+0.6
3,295,729	+				-2.9
3,295,730	-				-1.2
3,295,810	-		PP_2896	0.15	-1.2
3,295,810	-		PP_2896	0.15	-0.4
3,296,005	-		PP_2896	0.67	+0.4
3,296,005	-		PP_2896	0.67	-1.3
3,296,005	-		PP_2896	0.67	-3.5
3,296,005	-		PP_2896	0.67	-4.3
3,296,005	-		PP_2896	0.67	-0.4
3,296,040	+		PP_2896	0.76	+3.0
3,296,060	-		PP_2896	0.81	+0.9
3,296,240	+				-0.7
3,296,256	+				+0.9
3,296,257	-				-0.7
3,296,257	-				-0.0
3,296,257	-				-2.3
3,296,257	-				-1.3
3,296,301	-				+2.2
3,296,372	+				+0.3
3,296,426	+				-1.2
3,296,551	+		PP_2898	0.34	+0.0
3,296,551	+		PP_2898	0.34	+2.5
3,296,552	-		PP_2898	0.34	-0.5