Strain Fitness in Pseudomonas putida KT2440 around PP_2848

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,250,473	+		PP_2846	0.75	+0.4
3,250,473	+		PP_2846	0.75	-2.5
3,250,473	+		PP_2846	0.75	-4.8
3,250,515	-		PP_2846	0.84	+0.4
3,250,575	+				-0.6
3,250,990	-		PP_2847	0.68	-2.4
3,250,990	-		PP_2847	0.68	-2.1
3,251,229	+		PP_2848	0.10	-0.9
3,251,230	-		PP_2848	0.10	-1.7
3,251,362	+		PP_2848	0.30	+4.9
3,251,379	+				+0.3
3,251,813	-				+0.9
3,251,813	-				+1.6
3,251,813	-				-1.5
3,251,856	+				-1.0
3,251,857	-				-0.1
3,251,979	+		PP_2849	0.21	-2.6
3,251,979	+		PP_2849	0.21	-0.2
3,251,979	+				+0.3
3,251,980	-		PP_2849	0.21	+0.0
3,251,980	-		PP_2849	0.21	-0.6
3,252,318	+		PP_2849	0.75	-0.8
3,252,318	+		PP_2849	0.75	-0.2
3,252,318	+		PP_2849	0.75	+0.1
3,252,319	-		PP_2849	0.76	-2.8
3,252,319	-		PP_2849	0.76	-1.4
3,252,319	-		PP_2849	0.76	+0.8
3,252,319	-		PP_2849	0.76	+0.1
3,252,323	-		PP_2849	0.76	+0.3
3,252,562	+				-1.0
3,252,753	+				-0.7
3,252,829	-		PP_2851	0.16	-0.6
3,252,829	-		PP_2851	0.16	+0.2