Strain Fitness in Pseudomonas putida KT2440 around PP_2638

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
3,018,537	+		PP_2637	0.16	-0.4
3,018,537	+		PP_2637	0.16	-2.2
3,018,538	-		PP_2637	0.16	+1.1
3,018,559	+		PP_2637	0.18	-1.3
3,018,906	+		PP_2637	0.49	-2.9
3,018,907	-		PP_2637	0.49	-1.2
3,019,086	+		PP_2637	0.65	-0.2
3,019,086	+		PP_2637	0.65	+0.2
3,019,087	-		PP_2637	0.65	-1.6
3,019,087	-		PP_2637	0.65	-2.9
3,019,087	-		PP_2637	0.65	-1.8
3,019,104	+		PP_2637	0.67	-1.3
3,019,105	-				+0.3
3,019,164	+		PP_2637	0.72	-0.2
3,019,365	+				+0.1
3,019,369	-				+0.7
3,019,369	-				-0.9
3,019,864	-		PP_2638	0.11	-1.8
3,019,866	-		PP_2638	0.11	+1.5
3,019,917	-		PP_2638	0.13	+0.1
3,019,992	-				+2.9
3,020,133	-		PP_2638	0.19	+0.8
3,020,195	+		PP_2638	0.21	+0.3
3,020,619	-		PP_2638	0.33	+0.5
3,020,619	-		PP_2638	0.33	-0.2
3,020,684	+		PP_2638	0.35	-1.6
3,020,747	+		PP_2638	0.36	+0.3
3,020,780	+		PP_2638	0.37	-1.7
3,020,781	-		PP_2638	0.37	+0.7
3,020,781	-		PP_2638	0.37	-0.1
3,021,060	-		PP_2638	0.45	+0.3
3,021,184	+		PP_2638	0.49	+0.7
3,021,185	-		PP_2638	0.49	+1.3
3,021,277	+		PP_2638	0.52	+1.6
3,021,277	+		PP_2638	0.52	+1.9
3,021,347	+		PP_2638	0.54	+0.9
3,021,348	-		PP_2638	0.54	-0.5
3,021,351	-		PP_2638	0.54	-0.8
3,021,351	-		PP_2638	0.54	-0.1
3,021,360	+		PP_2638	0.54	+0.3
3,021,804	-		PP_2638	0.67	+1.7
3,021,842	+		PP_2638	0.68	+0.7
3,022,004	+		PP_2638	0.72	+0.7
3,022,004	+		PP_2638	0.72	+1.7
3,022,005	-		PP_2638	0.72	+0.3
3,022,005	-		PP_2638	0.72	-0.6
3,022,005	-		PP_2638	0.72	-0.6
3,022,164	-		PP_2638	0.77	+0.4
3,022,164	-		PP_2638	0.77	-2.9
3,022,404	-		PP_2638	0.84	+0.6
3,022,454	+		PP_2638	0.85	+3.6
3,022,488	+		PP_2638	0.86	-2.2
3,022,489	-		PP_2638	0.86	+0.4
3,022,565	+		PP_2638	0.88	+0.9
3,022,565	+		PP_2638	0.88	-3.2
3,022,565	+		PP_2638	0.88	-2.1
3,022,566	-		PP_2638	0.88	+0.2
3,022,566	-		PP_2638	0.88	-0.3
3,022,581	-		PP_2638	0.89	+1.3
3,022,607	+		PP_2638	0.89	+4.3
3,022,607	+		PP_2638	0.89	+0.3
3,022,607	+		PP_2638	0.89	-0.6
3,022,622	+		PP_2638	0.90	-4.0
3,022,623	-		PP_2638	0.90	+1.9
3,022,623	-		PP_2638	0.90	+2.9
3,022,672	+				+1.9
3,022,672	+				+0.5
3,022,673	-				-0.3
3,022,673	-				-1.2
3,022,821	+				-2.0
3,022,864	+				+1.8
3,022,865	-				+1.5
3,022,865	-				+0.6
3,022,874	+				+0.7
3,022,874	+				-0.3
3,022,874	+				-1.2
3,022,875	-				-2.3
3,022,882	+				+0.2
3,022,899	-				+0.5
3,022,935	+				+3.1
3,022,935	+				-3.6
3,022,935	+				-0.3
3,023,065	-				+0.5
3,023,074	+				+0.3
3,023,075	-				-0.8
3,023,075	-				+0.6
3,023,075	-				-1.5
3,023,078	+				+0.3
3,023,078	+				-1.6
3,023,078	+				+0.1
3,023,079	-				+0.2
3,023,250	+				+1.7
3,023,251	-				+0.1
3,023,440	+		PP_2639	0.14	-0.3
3,023,557	-		PP_2639	0.27	+2.1
3,023,637	+		PP_2639	0.37	-2.1
3,023,637	+		PP_2639	0.37	-0.8
3,023,637	+		PP_2639	0.37	-4.1
3,023,637	+		PP_2639	0.37	+0.5
3,023,637	+		PP_2639	0.37	-3.3
3,023,637	+		PP_2639	0.37	-0.8
3,023,638	-		PP_2639	0.37	+0.4
3,023,638	-		PP_2639	0.37	-0.7
3,023,638	-		PP_2639	0.37	-2.3
3,023,638	-		PP_2639	0.37	-1.2
3,023,638	-		PP_2639	0.37	+1.7
3,023,638	-		PP_2639	0.37	-0.1
3,023,638	-		PP_2639	0.37	+2.6
3,023,639	+		PP_2639	0.37	-1.7
3,023,639	+		PP_2639	0.37	+0.6
3,023,639	+		PP_2639	0.37	-2.5
3,023,716	-		PP_2639	0.46	-2.9
3,023,741	-		PP_2639	0.49	-0.5
3,023,956	+		PP_2639	0.73	-0.7
3,023,956	+		PP_2639	0.73	+1.7
3,023,956	+		PP_2639	0.73	-0.5
3,023,956	+		PP_2639	0.73	+0.8
3,023,957	-		PP_2639	0.74	+0.5
3,023,957	-		PP_2639	0.74	+1.3