Strain Fitness in Pseudomonas putida KT2440 around PP_2447

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
2,793,433	+		PP_2445	0.66	-1.1
2,793,433	+		PP_2445	0.66	-1.2
2,793,585	+		PP_2445	0.86	+0.4
2,793,586	-		PP_2445	0.86	-0.4
2,793,596	+		PP_2445	0.87	-0.8
2,793,596	+		PP_2445	0.87	+3.0
2,793,596	+		PP_2445	0.87	+0.7
2,793,596	+		PP_2445	0.87	-2.2
2,793,596	+		PP_2445	0.87	+3.2
2,793,597	-		PP_2445	0.87	-1.1
2,793,597	-		PP_2445	0.87	-0.3
2,793,597	-		PP_2445	0.87	+0.4
2,793,597	-		PP_2445	0.87	-0.7
2,793,597	-		PP_2445	0.87	-1.6
2,793,597	-		PP_2445	0.87	-0.4
2,793,602	+		PP_2445	0.88	-2.9
2,793,603	-				-0.6
2,793,695	-				+0.2
2,793,743	+				-2.0
2,793,769	+				+0.4
2,793,769	+				-0.6
2,793,770	-				+0.5
2,793,770	-				+0.4
2,793,819	+				-0.2
2,793,851	+				-1.6
2,793,851	+		PP_2446	0.18	-3.4
2,793,852	-		PP_2446	0.18	+1.0
2,793,852	-		PP_2446	0.18	-4.7
2,793,917	+		PP_2446	0.53	+1.4
2,793,918	-		PP_2446	0.54	+2.0
2,793,960	-		PP_2446	0.76	-0.2
2,793,960	-		PP_2446	0.76	-2.4
2,794,055	-				-0.9
2,794,055	-				-0.4
2,794,096	+				-1.2
2,794,096	+				+1.1
2,794,096	+				-4.2
2,794,096	+				-1.9
2,794,097	-				-0.3
2,794,097	-				-2.4
2,794,097	-				-0.8
2,794,102	+				-0.3
2,794,135	-				+1.4
2,794,136	+				-1.6
2,794,137	-				-3.2
2,794,157	+				-1.2
2,794,157	+				-1.6
2,794,158	-				+0.5
2,794,253	-		PP_2447	0.13	+0.0
2,794,359	+		PP_2447	0.27	-1.0
2,794,359	+		PP_2447	0.27	-2.2
2,794,428	-		PP_2447	0.37	-4.2
2,794,430	+		PP_2447	0.37	-3.3
2,794,431	-		PP_2447	0.37	+0.0
2,794,515	+		PP_2447	0.49	+0.4
2,794,516	-		PP_2447	0.49	-0.7
2,794,521	-		PP_2447	0.49	-2.0
2,794,636	-		PP_2447	0.65	-2.6
2,794,654	-		PP_2447	0.67	+0.2
2,794,662	+		PP_2447	0.69	-2.0
2,794,891	-				+0.4
2,794,948	-				+1.0
2,795,033	-				-0.8
2,795,033	-				+0.8
2,795,033	-				-1.5
2,795,175	-		PP_2448	0.13	-0.2
2,795,176	+		PP_2448	0.13	+0.3
2,795,176	+		PP_2448	0.13	-1.8
2,795,176	+		PP_2448	0.13	-0.5
2,795,176	+		PP_2448	0.13	-2.9
2,795,176	+		PP_2448	0.13	-0.3
2,795,176	+		PP_2448	0.13	-0.4
2,795,177	-		PP_2448	0.13	+0.5
2,795,177	-		PP_2448	0.13	+1.3
2,795,177	-		PP_2448	0.13	+2.0
2,795,177	-		PP_2448	0.13	-2.1
2,795,213	-		PP_2448	0.16	-0.7
2,795,374	+		PP_2448	0.29	-0.1
2,795,374	+		PP_2448	0.29	-1.2
2,795,375	-				-0.6
2,795,426	-		PP_2448	0.33	-3.3
2,795,437	+		PP_2448	0.34	+1.3
2,795,437	+		PP_2448	0.34	-0.5
2,795,437	+				+1.4
2,795,458	+		PP_2448	0.35	+1.5
2,795,458	+		PP_2448	0.35	-3.1
2,795,458	+		PP_2448	0.35	+0.2
2,795,458	+		PP_2448	0.35	+1.3
2,795,573	-		PP_2448	0.44	-0.7
2,795,677	+		PP_2448	0.52	-1.1
2,795,677	+		PP_2448	0.52	-2.7
2,795,677	+		PP_2448	0.52	+1.3
2,795,678	-		PP_2448	0.52	-1.0
2,795,678	-		PP_2448	0.52	+0.4
2,795,678	-		PP_2448	0.52	-4.4
2,795,776	+		PP_2448	0.60	+0.4
2,795,776	+		PP_2448	0.60	+1.4
2,795,776	+		PP_2448	0.60	+1.2
2,795,777	-		PP_2448	0.60	-0.2