Strain Fitness in Pseudomonas putida KT2440 around PP_2416

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
2,761,169	-		PP_2414	0.48	-3.4
2,761,169	-		PP_2414	0.48	-3.2
2,761,222	-		PP_2414	0.59	-3.7
2,761,300	+		PP_2414	0.75	-0.7
2,761,393	-				+2.0
2,761,453	+				+0.4
2,761,454	-				-2.2
2,761,455	+				+1.2
2,761,456	-				-0.1
2,761,456	-				-0.8
2,761,522	+		PP_2415	0.16	-0.6
2,761,693	+		PP_2415	0.43	-2.4
2,761,694	-		PP_2415	0.43	-3.5
2,761,694	-		PP_2415	0.43	+1.9
2,761,694	-		PP_2415	0.43	-0.7
2,761,694	-		PP_2415	0.43	+0.4
2,761,759	+		PP_2415	0.54	-2.6
2,761,760	-		PP_2415	0.54	-0.6
2,761,768	+		PP_2415	0.55	-0.7
2,761,769	-		PP_2415	0.55	+0.9
2,761,925	-		PP_2415	0.80	+0.6
2,761,925	-		PP_2415	0.80	-0.0
2,761,932	+		PP_2415	0.81	+0.4
2,761,932	+		PP_2415	0.81	+0.1
2,761,932	+		PP_2415	0.81	+0.7
2,761,933	-		PP_2415	0.81	+2.0
2,761,933	-				+0.4
2,762,043	-				+0.4
2,762,158	+				+2.7
2,762,159	-				+0.1
2,762,298	+		PP_2416	0.24	+0.3
2,762,344	-		PP_2416	0.30	+2.1
2,762,344	-		PP_2416	0.30	+1.7
2,763,548	+		PP_2417	0.64	-0.5
2,763,548	+		PP_2417	0.64	-0.6
2,763,624	+		PP_2417	0.72	+1.5
2,763,727	-		PP_2417	0.82	+3.4
2,763,727	-		PP_2417	0.82	-0.6