Strain Fitness in Pseudomonas putida KT2440 around PP_2107

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
2,403,808	+		PP_2106	0.36	-0.3
2,403,808	+		PP_2106	0.36	-0.1
2,403,820	-		PP_2106	0.37	+0.8
2,403,883	-		PP_2106	0.42	-0.0
2,404,166	-		PP_2106	0.66	-1.1
2,404,320	+				-1.2
2,404,321	-		PP_2106	0.78	+0.1
2,404,321	-		PP_2106	0.78	+0.4
2,404,478	+				+1.5
2,404,478	+				+2.0
2,404,479	-				+0.8
2,404,479	-				+0.7
2,404,567	+				-5.0
2,404,617	-				-2.0
2,404,621	+				+0.2
2,404,622	-				+1.0
2,404,634	-				-0.9
2,404,753	+		PP_2107	0.40	-2.8
2,404,754	-		PP_2107	0.41	-2.0
2,405,076	-		PP_2108	0.17	-0.9
2,405,113	+		PP_2108	0.25	+1.9
2,405,113	+		PP_2108	0.25	+0.4
2,405,114	-		PP_2108	0.25	+0.3
2,405,114	-		PP_2108	0.25	-0.7
2,405,114	-		PP_2108	0.25	+0.1
2,405,114	-		PP_2108	0.25	+0.2
2,405,114	-		PP_2108	0.25	-0.5
2,405,137	+		PP_2108	0.31	+1.9
2,405,137	+		PP_2108	0.31	+1.8
2,405,137	+		PP_2108	0.31	+0.9
2,405,466	+				-1.0
2,405,525	+				-1.1
2,405,526	-				-1.5
2,405,635	+		PP_2109	0.43	-0.2
2,405,697	+		PP_2109	0.63	-0.7
2,405,698	-		PP_2109	0.64	+1.9
2,405,698	-		PP_2109	0.64	+0.7
2,405,721	-		PP_2109	0.71	-1.5
2,405,721	-		PP_2109	0.71	-0.4
2,405,721	-		PP_2109	0.71	-1.6
2,405,730	-		PP_2109	0.74	+1.9
2,405,730	-		PP_2109	0.74	+1.0
2,405,761	-		PP_2109	0.84	+0.9