Strain Fitness in Pseudomonas putida KT2440 around PP_1947

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
2,201,334	+				+0.4
2,201,336	+				+0.4
2,201,354	+				+1.1
2,201,355	-				-0.4
2,201,355	-				+1.4
2,201,554	+		PP_1946	0.25	+0.5
2,201,555	-		PP_1946	0.25	+0.1
2,201,555	-		PP_1946	0.25	-1.1
2,201,652	-		PP_1946	0.38	-2.1
2,201,724	+		PP_1946	0.47	+0.9
2,201,724	+		PP_1946	0.47	+2.2
2,201,724	+		PP_1946	0.47	+3.4
2,201,725	-		PP_1946	0.47	+0.3
2,201,725	-		PP_1946	0.47	+0.4
2,201,725	-		PP_1946	0.47	+1.1
2,201,725	-		PP_1946	0.47	-0.7
2,201,725	-		PP_1946	0.47	+2.2
2,201,829	+		PP_1946	0.60	+1.0
2,201,851	+		PP_1946	0.63	+1.8
2,201,883	+		PP_1946	0.67	+0.8
2,201,883	+		PP_1946	0.67	-0.4
2,201,898	-		PP_1946	0.69	+0.4
2,201,906	+		PP_1946	0.70	-4.0
2,201,907	-		PP_1946	0.70	-2.7
2,202,063	+		PP_1946	0.90	+0.9
2,202,151	+				+0.7
2,202,270	-				-0.1
2,202,370	+				+0.2
2,202,396	+				-2.4
2,202,397	-				-0.2
2,202,398	+				-1.1
2,202,405	-				-2.9
2,202,584	+		PP_1947	0.26	-0.6
2,202,585	-		PP_1947	0.26	+0.4
2,202,585	-		PP_1947	0.26	-3.9
2,202,608	+		PP_1947	0.29	+4.7
2,202,609	-		PP_1947	0.29	+2.4
2,202,770	+		PP_1947	0.45	+0.5
2,202,770	+		PP_1947	0.45	-0.8
2,202,771	-		PP_1947	0.45	-2.7
2,202,804	-		PP_1947	0.48	+2.1
2,202,804	-		PP_1947	0.48	-0.2
2,202,804	-		PP_1947	0.48	+0.2
2,202,980	+		PP_1947	0.66	-0.8
2,202,984	-		PP_1947	0.67	-0.2
2,203,041	-		PP_1947	0.72	+0.6
2,203,218	-				+0.3
2,203,218	-				+0.2
2,203,396	+				+0.3
2,203,396	+				+1.0
2,203,411	+				-2.1
2,203,415	+				+1.5
2,203,435	+				+0.2
2,203,435	+				-0.1
2,203,436	-				-2.4
2,203,436	-				+1.7
2,203,437	+				+0.5
2,203,509	+		PP_1948	0.13	-3.0
2,203,510	-		PP_1948	0.13	-2.1
2,203,579	-		PP_1948	0.17	-0.3
2,203,579	-		PP_1948	0.17	-1.0
2,203,579	-		PP_1948	0.17	+4.5
2,203,592	+		PP_1948	0.18	-3.6
2,203,592	+		PP_1948	0.18	-2.6
2,203,593	-		PP_1948	0.18	-0.2
2,203,709	-		PP_1948	0.26	-0.2
2,203,711	+		PP_1948	0.26	-1.2
2,203,765	+		PP_1948	0.30	-1.2
2,203,765	+		PP_1948	0.30	-2.0
2,203,766	-		PP_1948	0.30	-1.4
2,203,774	+		PP_1948	0.30	-1.3
2,203,774	+		PP_1948	0.30	-0.2
2,203,774	+		PP_1948	0.30	+1.0
2,203,774	+		PP_1948	0.30	+0.3
2,203,774	+		PP_1948	0.30	+1.5
2,203,774	+		PP_1948	0.30	-0.8
2,203,775	-		PP_1948	0.30	-0.9
2,203,775	-		PP_1948	0.30	-0.7
2,203,775	-		PP_1948	0.30	+2.1
2,203,776	+		PP_1948	0.31	+2.7
2,203,776	+		PP_1948	0.31	-2.4
2,203,776	+		PP_1948	0.31	+0.9
2,203,777	-		PP_1948	0.31	+0.2
2,203,777	-		PP_1948	0.31	+1.6
2,203,970	+		PP_1948	0.44	+0.2
2,204,294	+		PP_1948	0.66	+1.0
2,204,295	-		PP_1948	0.66	-1.2