Strain Fitness in Pseudomonas putida KT2440 around PP_1357

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
1,545,738	-		PP_1355	0.76	-0.8
1,545,915	+		PP_1355	0.88	-0.5
1,545,916	-		PP_1355	0.88	-1.1
1,545,916	-		PP_1355	0.88	-1.0
1,545,916	-		PP_1355	0.88	-0.2
1,545,916	-		PP_1355	0.88	-0.0
1,546,008	+				+0.4
1,546,008	+				-0.6
1,546,008	+				-0.6
1,546,008	+				-0.4
1,546,009	-				-1.2
1,546,066	-				-0.8
1,546,147	+				-0.3
1,546,188	-		PP_1356	0.12	-1.6
1,546,206	+		PP_1356	0.17	-1.3
1,546,206	+		PP_1356	0.17	-0.2
1,546,206	+		PP_1356	0.17	-0.9
1,546,206	+		PP_1356	0.17	-1.8
1,546,207	-		PP_1356	0.17	-2.0
1,546,207	-		PP_1356	0.17	-2.0
1,546,207	-		PP_1356	0.17	-0.2
1,546,399	+		PP_1356	0.71	+0.9
1,546,400	-		PP_1356	0.72	+0.8
1,546,441	+		PP_1356	0.83	+2.0
1,546,441	+		PP_1356	0.83	-3.1
1,546,441	+		PP_1356	0.83	-0.1
1,546,441	+		PP_1356	0.83	+0.1
1,546,544	+				+1.7
1,546,609	+				+2.0
1,546,641	+				+0.3
1,546,641	+				+0.5
1,546,641	+				-0.4
1,546,641	+				-0.4
1,546,663	+				+0.5
1,546,759	-				+0.5
1,546,759	-				-1.6
1,546,811	+		PP_1357	0.15	-0.8
1,546,893	-		PP_1357	0.23	-1.5
1,546,893	-		PP_1357	0.23	-1.3
1,546,893	-		PP_1357	0.23	+0.0
1,546,893	-		PP_1357	0.23	+0.5
1,547,041	+		PP_1357	0.37	-3.3
1,547,042	-		PP_1357	0.37	-0.0
1,547,042	-		PP_1357	0.37	-0.8
1,547,063	+		PP_1357	0.39	+0.8
1,547,156	+		PP_1357	0.49	+0.3
1,547,157	-		PP_1357	0.49	-0.7
1,547,157	-		PP_1357	0.49	-1.1
1,547,157	-		PP_1357	0.49	-0.9
1,547,236	+		PP_1357	0.57	-1.0
1,547,237	-		PP_1357	0.57	-2.8
1,547,264	+		PP_1357	0.59	-0.7
1,547,264	+		PP_1357	0.59	-1.2
1,547,264	+		PP_1357	0.59	+0.0
1,547,413	+		PP_1357	0.74	+0.2
1,547,413	+		PP_1357	0.74	-2.3
1,547,420	+		PP_1357	0.75	-0.2
1,547,444	+		PP_1357	0.77	-0.4
1,547,444	+		PP_1357	0.77	+1.9
1,547,445	-		PP_1357	0.77	+2.2
1,547,525	+		PP_1357	0.85	-2.5
1,547,526	-		PP_1357	0.85	-0.2
1,547,555	+		PP_1357	0.88	+4.3
1,547,556	-		PP_1357	0.88	-0.5
1,547,556	-		PP_1357	0.88	+0.3
1,547,602	+				+0.3
1,547,602	+				+1.0
1,547,603	-				-0.5
1,547,603	-				-0.3
1,547,645	+				-0.3
1,547,646	-				+0.7
1,547,648	-				+1.1
1,547,648	-				+0.1
1,547,665	+				+0.2
1,547,672	+				-0.6
1,547,718	+				-0.4
1,547,719	-				-0.5
1,547,719	-				+0.2
1,547,763	-				-0.2
1,548,075	+		PP_1358	0.48	-0.2
1,548,075	+		PP_1358	0.48	+0.4
1,548,076	-		PP_1358	0.48	-1.4
1,548,076	-		PP_1358	0.48	-0.5
1,548,078	+		PP_1358	0.48	-2.3
1,548,085	-		PP_1358	0.49	+0.5
1,548,105	+		PP_1358	0.52	+1.9
1,548,105	+		PP_1358	0.52	-3.3
1,548,106	-		PP_1358	0.52	+2.1
1,548,106	-		PP_1358	0.52	-0.2
1,548,285	+		PP_1358	0.74	-2.6
1,548,316	+		PP_1358	0.78	+1.6
1,548,317	-		PP_1358	0.78	+0.3
1,548,337	+		PP_1358	0.81	+0.3
1,548,338	-		PP_1358	0.81	+3.6
1,548,399	-		PP_1358	0.89	-0.3
1,548,521	-				-0.2
1,548,532	-				+2.6
1,548,567	+				+1.2