Strain Fitness in Pseudomonas putida KT2440 around PP_1348

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
1,536,016	-		PP_1346	0.84	-1.3
1,536,063	+		PP_1346	0.88	+0.3
1,536,064	-		PP_1346	0.88	-1.1
1,536,064	-		PP_1346	0.88	+0.5
1,536,064	-		PP_1346	0.88	+0.3
1,536,066	-		PP_1346	0.88	+0.3
1,536,177	+				-0.4
1,536,177	+				-1.4
1,536,178	-				-3.4
1,536,203	+				-2.0
1,536,204	-				+0.8
1,536,204	-				-1.5
1,536,204	-				-3.6
1,536,204	-				-0.1
1,536,212	+				-3.4
1,536,212	+				+3.3
1,536,213	-				-3.2
1,536,290	+				+0.1
1,536,371	+				-3.2
1,536,371	+				-2.5
1,536,372	-				+0.3
1,536,372	-				-3.6
1,536,372	-				-1.7
1,536,398	+				-1.3
1,536,399	-				+0.3
1,536,453	-		PP_1347	0.14	-2.0
1,536,453	-		PP_1347	0.14	-3.1
1,536,773	-		PP_1347	0.64	+0.6
1,536,898	-		PP_1347	0.84	+0.1
1,536,923	+		PP_1347	0.88	-0.1
1,536,923	+		PP_1347	0.88	-0.8
1,536,924	-		PP_1347	0.88	-0.4
1,536,924	-		PP_1347	0.88	-3.0
1,536,924	-		PP_1347	0.88	-3.0
1,536,924	-		PP_1347	0.88	+0.9
1,536,924	-		PP_1347	0.88	+0.1
1,536,938	+				+0.1
1,536,939	-				+0.3
1,536,939	-				+2.8
1,536,988	+				+3.1
1,536,989	-				-1.7
1,536,989	-				-3.7
1,537,010	+				-4.2
1,537,010	+				+0.3
1,537,011	-				-2.0
1,537,011	-				+0.7
1,537,013	+				-1.2
1,537,178	+		PP_1348	0.19	+0.3
1,537,388	-				-3.6
1,537,388	-		PP_1348	0.42	-3.0
1,537,492	+		PP_1348	0.53	+0.3
1,537,492	+		PP_1348	0.53	-2.7
1,537,492	+		PP_1348	0.53	+0.3
1,537,492	+		PP_1348	0.53	-4.5
1,537,493	-		PP_1348	0.53	-4.6
1,537,493	-		PP_1348	0.53	-4.0
1,537,493	-		PP_1348	0.53	-3.8
1,537,493	-		PP_1348	0.53	-2.5
1,537,493	-		PP_1348	0.53	-4.0
1,537,504	+		PP_1348	0.54	+0.3
1,537,636	+		PP_1348	0.68	-3.5
1,537,637	-		PP_1348	0.68	+0.3
1,537,904	+				-3.5
1,537,966	+				-0.3
1,537,966	+				-3.8
1,537,966	+				-1.3
1,537,967	-				-0.4
1,537,967	-				-1.8
1,537,969	+				-1.3
1,537,970	-				-1.0
1,537,970	-				+0.3
1,537,970	-				+1.7
1,538,074	-		PP_1349	0.18	-2.2
1,538,075	+		PP_1349	0.18	-0.6
1,538,076	-		PP_1349	0.19	-0.8
1,538,076	-		PP_1349	0.19	+1.3
1,538,076	-		PP_1349	0.19	+0.7
1,538,077	+		PP_1349	0.19	-1.7
1,538,078	-		PP_1349	0.19	+1.0
1,538,078	-		PP_1349	0.19	-2.3
1,538,078	-		PP_1349	0.19	+0.3
1,538,288	-		PP_1349	0.56	-0.4
1,538,512	+				-3.2
1,538,512	+				+0.4
1,538,513	-				-0.7
1,538,513	-				+0.1
1,538,513	-				+1.9
1,538,513	-				-1.0
1,538,513	-				-1.5
1,538,513	-				+0.3
1,538,513	-				+0.1
1,538,513	-				-1.5