Strain Fitness in Pseudomonas putida KT2440 around PP_1054

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
1,202,560	+		PP_1053	0.36	+1.0
1,202,646	+		PP_1053	0.44	+0.4
1,202,647	-				+1.4
1,202,771	-		PP_1053	0.55	+0.1
1,203,023	-		PP_1053	0.78	-1.8
1,203,023	-		PP_1053	0.78	+1.0
1,203,041	+		PP_1053	0.80	-2.2
1,203,041	+		PP_1053	0.80	+0.4
1,203,042	-		PP_1053	0.80	-2.3
1,203,042	-		PP_1053	0.80	+0.3
1,203,053	-		PP_1053	0.81	+1.5
1,203,185	+				-1.0
1,203,438	+		PP_1054	0.47	-3.8
1,203,438	+		PP_1054	0.47	-1.9
1,203,439	-		PP_1054	0.47	-2.0
1,203,671	+				+2.6
1,203,671	+				+1.7
1,203,671	+				-1.2
1,204,050	-		PP_1055	0.61	+0.4
1,204,050	-		PP_1055	0.61	-2.2
1,204,301	-				+0.1
1,204,327	+				+1.4
1,204,327	+				+1.1
1,204,328	-				-0.0
1,204,328	-				-1.9
1,204,328	-				-1.0
1,204,331	+				+2.4
1,204,331	+				+1.8
1,204,332	-				-2.2
1,204,332	-				-0.3
1,204,332	-				+1.6
1,204,332	-				-0.3
1,204,332	-				-1.0
1,204,332	-				+0.9
1,204,386	+				+0.5
1,204,386	+				+0.2
1,204,387	-				+0.7
1,204,398	+				+3.2
1,204,496	+				+1.0
1,204,497	-				+2.6
1,204,510	+				+0.8
1,204,510	+				-0.8
1,204,510	+				-0.6
1,204,592	+		PP_1056	0.17	-0.9
1,204,592	+		PP_1056	0.17	+0.8
1,204,593	-		PP_1056	0.17	+1.3
1,204,621	-		PP_1056	0.21	+0.5