Strain Fitness in Pseudomonas putida KT2440 around PP_1052

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
1,200,648	+		PP_1049	0.66	+1.2
1,200,649	-		PP_1049	0.67	-0.6
1,200,688	-		PP_1049	0.75	-0.5
1,200,688	-		PP_1049	0.75	-2.3
1,200,730	-		PP_1049	0.84	+0.0
1,200,798	+				+0.0
1,200,799	-				+1.7
1,201,157	+		PP_1050	0.82	-0.1
1,201,275	+		PP_1051	0.20	+1.3
1,201,320	+		PP_1051	0.31	-2.7
1,201,321	-		PP_1051	0.31	+0.0
1,201,418	+		PP_1051	0.55	-1.7
1,201,419	-		PP_1051	0.55	-2.1
1,201,574	+				+2.8
1,201,575	-				-1.5
1,201,575	-				-1.2
1,201,575	-				+2.6
1,201,575	-				+2.0
1,201,984	+		PP_1052	0.65	+0.4
1,202,149	+				-0.8
1,202,149	+				+0.4
1,202,149	+				-0.8
1,202,150	-				+0.4
1,202,150	-				+1.4
1,202,208	-				-3.3
1,202,560	+		PP_1053	0.36	+1.0
1,202,646	+		PP_1053	0.44	+0.4
1,202,647	-				+1.4
1,202,771	-		PP_1053	0.55	+0.1
1,203,023	-		PP_1053	0.78	-1.8
1,203,023	-		PP_1053	0.78	+1.0
1,203,041	+		PP_1053	0.80	-2.2
1,203,041	+		PP_1053	0.80	+0.4
1,203,042	-		PP_1053	0.80	-2.3
1,203,042	-		PP_1053	0.80	+0.3
1,203,053	-		PP_1053	0.81	+1.5
1,203,185	+				-1.0