Strain Fitness in Pseudomonas putida KT2440 around PP_1013

Experiment: pH 9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 9
1,153,873	+		PP_1011	0.81	-3.0
1,153,873	+		PP_1011	0.81	-5.4
1,153,873	+		PP_1011	0.81	-1.2
1,153,874	-		PP_1011	0.81	-4.0
1,153,874	-		PP_1011	0.81	-3.0
1,153,874	-		PP_1011	0.81	-3.2
1,153,874	-		PP_1011	0.81	-0.6
1,153,874	-		PP_1011	0.81	-2.9
1,153,875	+		PP_1011	0.81	-2.4
1,153,876	-		PP_1011	0.81	-2.2
1,153,876	-		PP_1011	0.81	+0.4
1,153,876	-		PP_1011	0.81	-1.9
1,153,956	+		PP_1011	0.89	-0.3
1,153,956	+		PP_1011	0.89	-1.6
1,153,956	+		PP_1011	0.89	-2.9
1,153,966	+				-3.5
1,154,113	+				-1.5
1,154,113	+				-1.4
1,154,113	+				-2.6
1,154,113	+				-3.7
1,154,114	-				-3.4
1,154,207	-				-1.3
1,154,207	-				-2.9
1,154,349	-		PP_1012	0.29	+0.0
1,154,376	-		PP_1012	0.33	-2.2
1,154,376	-		PP_1012	0.33	-3.0
1,154,379	+		PP_1012	0.33	+0.4
1,154,379	+		PP_1012	0.33	-3.9
1,154,379	+		PP_1012	0.33	-1.9
1,154,379	+		PP_1012	0.33	+0.7
1,154,379	+		PP_1012	0.33	-2.7
1,154,380	-		PP_1012	0.33	-2.1
1,154,380	-		PP_1012	0.33	+0.4
1,154,450	-		PP_1012	0.43	-2.9
1,154,827	+				-3.8
1,154,828	-				-2.4
1,154,956	+				+0.4
1,154,956	+				-1.6
1,154,956	+				-1.8
1,154,957	-				-2.6
1,154,957	-				-3.0
1,154,957	-				-1.1
1,154,957	-				-3.4
1,154,957	-				-2.7
1,155,048	-		PP_1013	0.14	-2.2
1,155,330	-		PP_1013	0.33	-1.1
1,155,364	-		PP_1013	0.36	-1.9
1,155,404	+		PP_1013	0.39	-0.9
1,155,404	+		PP_1013	0.39	-1.6
1,155,405	-		PP_1013	0.39	+0.4
1,155,405	-		PP_1013	0.39	-3.0
1,155,431	+		PP_1013	0.40	-2.5
1,155,668	-		PP_1013	0.57	+2.4
1,155,677	+		PP_1013	0.57	-3.3
1,155,890	-		PP_1013	0.72	+3.2
1,155,921	-		PP_1013	0.74	-2.2
1,155,969	-		PP_1013	0.77	-2.4
1,156,032	-		PP_1013	0.82	-0.9
1,156,176	-				+0.4
1,156,214	-				+0.4
1,156,275	-				-1.1
1,156,289	-				-3.7
1,156,345	-				-2.5
1,156,372	-				-0.1
1,156,531	+				+1.0
1,156,531	+				-2.2
1,156,531	+				+0.4
1,156,532	-				-0.7
1,156,756	+		PP_1014	0.19	+1.9
1,156,756	+		PP_1014	0.19	-1.4
1,156,862	-		PP_1014	0.28	-0.6
1,156,862	-		PP_1014	0.28	-0.6
1,156,926	+		PP_1014	0.33	+0.7
1,156,926	+		PP_1014	0.33	-3.8
1,156,926	+		PP_1014	0.33	-0.0
1,156,927	-		PP_1014	0.33	+0.4
1,156,927	-		PP_1014	0.33	-1.6
1,156,927	-		PP_1014	0.33	-0.1
1,156,927	-		PP_1014	0.33	+4.1
1,156,927	-		PP_1014	0.33	-0.3
1,157,148	+		PP_1014	0.51	-2.7
1,157,218	+		PP_1014	0.56	-2.2
1,157,218	+		PP_1014	0.56	-3.4
1,157,219	-		PP_1014	0.56	+0.4
1,157,219	-		PP_1014	0.56	-0.1
1,157,254	+		PP_1014	0.59	-4.4
1,157,255	-		PP_1014	0.59	+0.8
1,157,262	+		PP_1014	0.60	-1.7
1,157,262	+		PP_1014	0.60	+0.7
1,157,263	+		PP_1014	0.60	+0.2
1,157,263	-		PP_1014	0.60	-0.2
1,157,263	-		PP_1014	0.60	+0.6