Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1011 and PP_1012 are separated by 78 nucleotides PP_1012 and PP_1013 overlap by 20 nucleotides PP_1013 and PP_1014 are separated by 215 nucleotides
PP_1011: PP_1011 - glucokinase, at 1,153,099 to 1,154,058
_1011
PP_1012: PP_1012 - DNA-binding response regulator, at 1,154,137 to 1,154,862
_1012
PP_1013: PP_1013 - Sensor histidine kinase, at 1,154,843 to 1,156,297
_1013
PP_1014: PP_1014 - aldose-ketose isomerase, at 1,156,513 to 1,157,763
_1014
Position (kb)
1154
1155
1156
1157 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 1153.873 kb on + strand, within PP_1011 at 1153.873 kb on + strand, within PP_1011 at 1153.873 kb on + strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.875 kb on + strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.966 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.114 kb on - strand at 1154.207 kb on - strand at 1154.207 kb on - strand at 1154.349 kb on - strand, within PP_1012 at 1154.376 kb on - strand, within PP_1012 at 1154.376 kb on - strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.380 kb on - strand, within PP_1012 at 1154.380 kb on - strand, within PP_1012 at 1154.450 kb on - strand, within PP_1012 at 1154.827 kb on + strand at 1154.828 kb on - strand at 1154.956 kb on + strand at 1154.956 kb on + strand at 1154.956 kb on + strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1155.048 kb on - strand, within PP_1013 at 1155.330 kb on - strand, within PP_1013 at 1155.364 kb on - strand, within PP_1013 at 1155.404 kb on + strand, within PP_1013 at 1155.404 kb on + strand, within PP_1013 at 1155.405 kb on - strand, within PP_1013 at 1155.405 kb on - strand, within PP_1013 at 1155.431 kb on + strand, within PP_1013 at 1155.668 kb on - strand, within PP_1013 at 1155.677 kb on + strand, within PP_1013 at 1155.890 kb on - strand, within PP_1013 at 1155.921 kb on - strand, within PP_1013 at 1155.969 kb on - strand, within PP_1013 at 1156.032 kb on - strand, within PP_1013 at 1156.176 kb on - strand at 1156.214 kb on - strand at 1156.275 kb on - strand at 1156.289 kb on - strand at 1156.345 kb on - strand at 1156.372 kb on - strand at 1156.531 kb on + strand at 1156.531 kb on + strand at 1156.531 kb on + strand at 1156.532 kb on - strand at 1156.756 kb on + strand, within PP_1014 at 1156.756 kb on + strand, within PP_1014 at 1156.862 kb on - strand, within PP_1014 at 1156.862 kb on - strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1157.148 kb on + strand, within PP_1014 at 1157.218 kb on + strand, within PP_1014 at 1157.218 kb on + strand, within PP_1014 at 1157.219 kb on - strand, within PP_1014 at 1157.219 kb on - strand, within PP_1014 at 1157.254 kb on + strand, within PP_1014 at 1157.255 kb on - strand, within PP_1014 at 1157.262 kb on + strand, within PP_1014 at 1157.262 kb on + strand, within PP_1014 at 1157.263 kb on + strand, within PP_1014 at 1157.263 kb on - strand, within PP_1014 at 1157.263 kb on - strand, within PP_1014
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 1,153,873 + PP_1011 0.81 -3.0 1,153,873 + PP_1011 0.81 -5.4 1,153,873 + PP_1011 0.81 -1.2 1,153,874 - PP_1011 0.81 -4.0 1,153,874 - PP_1011 0.81 -3.0 1,153,874 - PP_1011 0.81 -3.2 1,153,874 - PP_1011 0.81 -0.6 1,153,874 - PP_1011 0.81 -2.9 1,153,875 + PP_1011 0.81 -2.4 1,153,876 - PP_1011 0.81 -2.2 1,153,876 - PP_1011 0.81 +0.4 1,153,876 - PP_1011 0.81 -1.9 1,153,956 + PP_1011 0.89 -0.3 1,153,956 + PP_1011 0.89 -1.6 1,153,956 + PP_1011 0.89 -2.9 1,153,966 + -3.5 1,154,113 + -1.5 1,154,113 + -1.4 1,154,113 + -2.6 1,154,113 + -3.7 1,154,114 - -3.4 1,154,207 - -1.3 1,154,207 - -2.9 1,154,349 - PP_1012 0.29 +0.0 1,154,376 - PP_1012 0.33 -2.2 1,154,376 - PP_1012 0.33 -3.0 1,154,379 + PP_1012 0.33 +0.4 1,154,379 + PP_1012 0.33 -3.9 1,154,379 + PP_1012 0.33 -1.9 1,154,379 + PP_1012 0.33 +0.7 1,154,379 + PP_1012 0.33 -2.7 1,154,380 - PP_1012 0.33 -2.1 1,154,380 - PP_1012 0.33 +0.4 1,154,450 - PP_1012 0.43 -2.9 1,154,827 + -3.8 1,154,828 - -2.4 1,154,956 + +0.4 1,154,956 + -1.6 1,154,956 + -1.8 1,154,957 - -2.6 1,154,957 - -3.0 1,154,957 - -1.1 1,154,957 - -3.4 1,154,957 - -2.7 1,155,048 - PP_1013 0.14 -2.2 1,155,330 - PP_1013 0.33 -1.1 1,155,364 - PP_1013 0.36 -1.9 1,155,404 + PP_1013 0.39 -0.9 1,155,404 + PP_1013 0.39 -1.6 1,155,405 - PP_1013 0.39 +0.4 1,155,405 - PP_1013 0.39 -3.0 1,155,431 + PP_1013 0.40 -2.5 1,155,668 - PP_1013 0.57 +2.4 1,155,677 + PP_1013 0.57 -3.3 1,155,890 - PP_1013 0.72 +3.2 1,155,921 - PP_1013 0.74 -2.2 1,155,969 - PP_1013 0.77 -2.4 1,156,032 - PP_1013 0.82 -0.9 1,156,176 - +0.4 1,156,214 - +0.4 1,156,275 - -1.1 1,156,289 - -3.7 1,156,345 - -2.5 1,156,372 - -0.1 1,156,531 + +1.0 1,156,531 + -2.2 1,156,531 + +0.4 1,156,532 - -0.7 1,156,756 + PP_1014 0.19 +1.9 1,156,756 + PP_1014 0.19 -1.4 1,156,862 - PP_1014 0.28 -0.6 1,156,862 - PP_1014 0.28 -0.6 1,156,926 + PP_1014 0.33 +0.7 1,156,926 + PP_1014 0.33 -3.8 1,156,926 + PP_1014 0.33 -0.0 1,156,927 - PP_1014 0.33 +0.4 1,156,927 - PP_1014 0.33 -1.6 1,156,927 - PP_1014 0.33 -0.1 1,156,927 - PP_1014 0.33 +4.1 1,156,927 - PP_1014 0.33 -0.3 1,157,148 + PP_1014 0.51 -2.7 1,157,218 + PP_1014 0.56 -2.2 1,157,218 + PP_1014 0.56 -3.4 1,157,219 - PP_1014 0.56 +0.4 1,157,219 - PP_1014 0.56 -0.1 1,157,254 + PP_1014 0.59 -4.4 1,157,255 - PP_1014 0.59 +0.8 1,157,262 + PP_1014 0.60 -1.7 1,157,262 + PP_1014 0.60 +0.7 1,157,263 + PP_1014 0.60 +0.2 1,157,263 - PP_1014 0.60 -0.2 1,157,263 - PP_1014 0.60 +0.6
Or see this region's nucleotide sequence