Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0675 and PP_0676 are separated by 59 nucleotides PP_0676 and PP_0677 are separated by 67 nucleotides PP_0677 and PP_0678 are separated by 101 nucleotides
PP_0675: PP_0675 - glutamate dehydrogenase, NADP-dependent, at 788,763 to 790,112
_0675
PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669
_0676
PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093
_0677
PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048
_0678
Position (kb) 790
791
792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 789.777 kb on - strand, within PP_0675 at 789.785 kb on + strand, within PP_0675 at 789.786 kb on - strand, within PP_0675 at 789.786 kb on - strand, within PP_0675 at 789.818 kb on + strand, within PP_0675 at 789.836 kb on + strand, within PP_0675 at 789.837 kb on - strand, within PP_0675 at 790.012 kb on - strand at 790.041 kb on + strand at 790.042 kb on - strand at 790.042 kb on - strand at 790.203 kb on - strand at 790.203 kb on - strand at 790.391 kb on + strand, within PP_0676 at 790.399 kb on + strand, within PP_0676 at 790.452 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.584 kb on + strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.585 kb on - strand, within PP_0676 at 790.671 kb on + strand at 790.671 kb on + strand at 790.671 kb on + strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.672 kb on - strand at 790.750 kb on + strand at 790.751 kb on - strand at 790.823 kb on - strand, within PP_0677 at 790.892 kb on - strand, within PP_0677 at 790.910 kb on - strand, within PP_0677 at 790.917 kb on + strand, within PP_0677 at 791.093 kb on + strand at 791.093 kb on + strand at 791.128 kb on + strand at 791.148 kb on - strand at 791.199 kb on + strand at 791.199 kb on + strand at 791.200 kb on - strand at 791.205 kb on + strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.206 kb on - strand at 791.321 kb on + strand at 791.321 kb on + strand at 791.322 kb on - strand at 791.322 kb on - strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.352 kb on + strand at 791.353 kb on - strand at 791.353 kb on - strand at 791.691 kb on + strand, within PP_0678 at 791.691 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.745 kb on + strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.770 kb on - strand, within PP_0678 at 791.787 kb on + strand, within PP_0678 at 791.788 kb on - strand, within PP_0678 at 791.796 kb on + strand, within PP_0678 at 792.072 kb on - strand, within PP_0678
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 789,777 - PP_0675 0.75 -3.2 789,785 + PP_0675 0.76 -2.2 789,786 - PP_0675 0.76 -2.8 789,786 - PP_0675 0.76 -1.0 789,818 + PP_0675 0.78 -0.1 789,836 + PP_0675 0.79 +0.8 789,837 - PP_0675 0.80 -1.1 790,012 - -1.1 790,041 + -3.0 790,042 - +3.2 790,042 - +0.4 790,203 - +0.4 790,203 - -3.0 790,391 + PP_0676 0.44 -0.5 790,399 + PP_0676 0.46 +3.5 790,452 + PP_0676 0.56 -0.2 790,584 + PP_0676 0.83 -2.8 790,584 + PP_0676 0.83 -1.3 790,585 - PP_0676 0.83 -0.6 790,585 - PP_0676 0.83 +0.9 790,585 - PP_0676 0.83 -0.1 790,585 - PP_0676 0.83 +0.4 790,585 - PP_0676 0.83 +1.7 790,671 + -0.1 790,671 + +1.4 790,671 + -2.2 790,672 - +0.9 790,672 - +0.5 790,672 - -1.8 790,672 - -0.2 790,672 - -0.8 790,672 - -2.0 790,750 + -1.5 790,751 - -0.4 790,823 - PP_0677 0.24 +1.8 790,892 - PP_0677 0.43 +2.8 790,910 - PP_0677 0.48 +1.4 790,917 + PP_0677 0.50 +0.4 791,093 + +1.6 791,093 + -0.5 791,128 + -3.2 791,148 - -0.4 791,199 + -1.8 791,199 + -2.8 791,200 - +5.4 791,205 + +0.8 791,206 - +0.1 791,206 - -1.4 791,206 - +0.7 791,321 + +2.1 791,321 + +0.4 791,322 - -2.6 791,322 - -1.1 791,352 + +0.8 791,352 + +1.7 791,352 + +1.0 791,353 - -0.3 791,353 - -2.8 791,691 + PP_0678 0.27 +3.1 791,691 + PP_0678 0.27 -1.1 791,745 + PP_0678 0.30 +0.4 791,745 + PP_0678 0.30 -0.6 791,745 + PP_0678 0.30 -4.2 791,770 - PP_0678 0.31 +0.4 791,770 - PP_0678 0.31 -1.1 791,770 - PP_0678 0.31 +0.1 791,787 + PP_0678 0.32 +1.2 791,788 - PP_0678 0.32 -0.1 791,796 + PP_0678 0.32 +0.4 792,072 - PP_0678 0.47 +0.2
Or see this region's nucleotide sequence