Strain Fitness in Pseudomonas putida KT2440 around PP_0545

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0544 and PP_0545 are separated by 227 nucleotidesPP_0545 and PP_0546 are separated by 254 nucleotides PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692 _0544 PP_0545: PP_0545 - aldehyde dehydrogenase, at 631,920 to 633,440 _0545 PP_0546: PP_0546 - sigma-54 dependent transcriptional regulator, at 633,695 to 635,710 _0546 Position (kb) 631 632 633 634Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 631.013 kb on + strand, within PP_0544at 631.130 kb on - strand, within PP_0544at 631.232 kb on + strand, within PP_0544at 631.233 kb on - strandat 631.244 kb on + strand, within PP_0544at 631.244 kb on + strand, within PP_0544at 631.244 kb on + strand, within PP_0544at 631.244 kb on + strand, within PP_0544at 631.245 kb on - strand, within PP_0544at 631.394 kb on + strand, within PP_0544at 631.457 kb on + strand, within PP_0544at 631.457 kb on + strandat 631.458 kb on - strand, within PP_0544at 631.458 kb on - strand, within PP_0544at 631.535 kb on + strand, within PP_0544at 631.554 kb on - strandat 631.554 kb on - strandat 631.580 kb on - strandat 631.623 kb on - strandat 631.692 kb on + strandat 631.692 kb on + strandat 631.850 kb on + strandat 631.850 kb on + strandat 631.851 kb on - strandat 631.884 kb on + strandat 631.922 kb on - strandat 631.949 kb on - strandat 631.949 kb on - strandat 631.978 kb on + strandat 631.978 kb on + strandat 632.057 kb on - strandat 632.065 kb on + strandat 632.066 kb on - strandat 632.066 kb on - strandat 632.290 kb on + strand, within PP_0545at 632.290 kb on + strand, within PP_0545at 632.290 kb on + strand, within PP_0545at 632.290 kb on + strand, within PP_0545at 632.291 kb on - strand, within PP_0545at 632.378 kb on - strand, within PP_0545at 632.378 kb on - strand, within PP_0545at 632.378 kb on - strand, within PP_0545at 632.717 kb on + strand, within PP_0545at 632.785 kb on + strand, within PP_0545at 632.796 kb on + strand, within PP_0545at 632.797 kb on - strand, within PP_0545at 632.844 kb on + strand, within PP_0545at 632.845 kb on - strand, within PP_0545at 632.996 kb on - strand, within PP_0545at 633.281 kb on + strand, within PP_0545at 633.281 kb on + strand, within PP_0545at 633.281 kb on + strand, within PP_0545at 633.282 kb on - strand, within PP_0545at 633.326 kb on + strandat 633.356 kb on + strandat 633.356 kb on + strandat 633.356 kb on + strandat 633.357 kb on - strandat 633.357 kb on - strandat 633.376 kb on + strandat 633.377 kb on - strandat 633.377 kb on - strandat 633.377 kb on - strandat 633.377 kb on - strandat 633.377 kb on - strandat 633.385 kb on + strandat 633.434 kb on - strandat 633.456 kb on + strandat 633.456 kb on + strandat 633.675 kb on - strandat 633.689 kb on - strandat 633.736 kb on + strandat 633.815 kb on + strandat 633.816 kb on - strandat 634.252 kb on - strand, within PP_0546at 634.319 kb on + strand, within PP_0546at 634.319 kb on + strand, within PP_0546at 634.320 kb on - strand, within PP_0546at 634.320 kb on - strand, within PP_0546

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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631,013 + PP_0544 0.53 +0.9
631,130 - PP_0544 0.61 -0.7
631,232 + PP_0544 0.68 +3.5
631,233 - +0.4
631,244 + PP_0544 0.69 +0.5
631,244 + PP_0544 0.69 -0.3
631,244 + PP_0544 0.69 -1.0
631,244 + PP_0544 0.69 -0.4
631,245 - PP_0544 0.69 -0.7
631,394 + PP_0544 0.79 +1.0
631,457 + PP_0544 0.84 +0.4
631,457 + +0.4
631,458 - PP_0544 0.84 -2.0
631,458 - PP_0544 0.84 +1.0
631,535 + PP_0544 0.89 -0.0
631,554 - +0.5
631,554 - +0.5
631,580 - +0.0
631,623 - +0.3
631,692 + +1.4
631,692 + -1.2
631,850 + +0.9
631,850 + -0.6
631,851 - +0.4
631,884 + -1.6
631,922 - -0.0
631,949 - -0.6
631,949 - +0.3
631,978 + -3.5
631,978 + +0.9
632,057 - +0.4
632,065 + +0.8
632,066 - -1.6
632,066 - -0.0
632,290 + PP_0545 0.24 -0.8
632,290 + PP_0545 0.24 +1.2
632,290 + PP_0545 0.24 -0.4
632,290 + PP_0545 0.24 -2.4
632,291 - PP_0545 0.24 -0.2
632,378 - PP_0545 0.30 +0.4
632,378 - PP_0545 0.30 -2.9
632,378 - PP_0545 0.30 -0.5
632,717 + PP_0545 0.52 -0.1
632,785 + PP_0545 0.57 -0.1
632,796 + PP_0545 0.58 +0.4
632,797 - PP_0545 0.58 -4.2
632,844 + PP_0545 0.61 -1.1
632,845 - PP_0545 0.61 -0.5
632,996 - PP_0545 0.71 -0.6
633,281 + PP_0545 0.89 -2.8
633,281 + PP_0545 0.89 -0.6
633,281 + PP_0545 0.89 -1.0
633,282 - PP_0545 0.90 +2.9
633,326 + +0.4
633,356 + -0.1
633,356 + +3.5
633,356 + +3.2
633,357 - -4.3
633,357 - +0.2
633,376 + -1.3
633,377 - -2.2
633,377 - -0.4
633,377 - -3.2
633,377 - +0.4
633,377 - +0.7
633,385 + -0.3
633,434 - -0.7
633,456 + +2.0
633,456 + +0.7
633,675 - +0.7
633,689 - -0.1
633,736 + -0.3
633,815 + +0.4
633,816 - +3.2
634,252 - PP_0546 0.28 -0.5
634,319 + PP_0546 0.31 +0.5
634,319 + PP_0546 0.31 +0.9
634,320 - PP_0546 0.31 -0.8
634,320 - PP_0546 0.31 +0.4

Or see this region's nucleotide sequence