Strain Fitness in Pseudomonas putida KT2440 around PP_0532

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0531 and PP_0532 are separated by 21 nucleotidesPP_0532 and PP_0533 are separated by 100 nucleotides PP_0531: PP_0531 - hypothetical protein, at 616,673 to 617,653 _0531 PP_0532: PP_0532 - conserved exported protein of unknown function, at 617,675 to 618,568 _0532 PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997 _0533 Position (kb) 617 618 619Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 616.685 kb on + strandat 616.760 kb on + strandat 616.761 kb on - strandat 616.761 kb on - strandat 616.826 kb on + strand, within PP_0531at 616.826 kb on + strand, within PP_0531at 616.827 kb on - strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.884 kb on - strand, within PP_0531at 616.953 kb on - strand, within PP_0531at 616.953 kb on - strand, within PP_0531at 617.003 kb on + strand, within PP_0531at 617.003 kb on + strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.021 kb on + strand, within PP_0531at 617.022 kb on - strand, within PP_0531at 617.273 kb on - strand, within PP_0531at 617.273 kb on - strand, within PP_0531at 617.280 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.304 kb on - strand, within PP_0531at 617.332 kb on + strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.393 kb on + strand, within PP_0531at 617.480 kb on + strand, within PP_0531at 617.480 kb on + strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.482 kb on + strand, within PP_0531at 617.482 kb on + strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.489 kb on + strand, within PP_0531at 617.490 kb on - strand, within PP_0531at 617.627 kb on + strandat 617.628 kb on - strandat 617.628 kb on - strandat 617.639 kb on + strandat 617.640 kb on - strandat 617.640 kb on - strandat 617.977 kb on - strand, within PP_0532at 618.033 kb on + strand, within PP_0532at 618.033 kb on + strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.199 kb on - strand, within PP_0532at 618.447 kb on + strand, within PP_0532at 618.447 kb on + strand, within PP_0532at 618.623 kb on - strandat 618.634 kb on - strandat 618.634 kb on - strandat 618.642 kb on + strandat 618.642 kb on + strandat 618.643 kb on - strandat 618.652 kb on + strandat 618.653 kb on - strandat 618.812 kb on - strand, within PP_0533at 619.182 kb on + strand, within PP_0533at 619.473 kb on + strand, within PP_0533at 619.474 kb on - strand, within PP_0533at 619.485 kb on + strand, within PP_0533at 619.486 kb on - strand, within PP_0533

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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616,685 + -1.2
616,760 + -3.6
616,761 - +0.6
616,761 - -0.9
616,826 + PP_0531 0.16 +0.7
616,826 + PP_0531 0.16 -0.5
616,827 - PP_0531 0.16 +0.0
616,871 + PP_0531 0.20 -0.0
616,871 + PP_0531 0.20 +1.4
616,871 + PP_0531 0.20 -0.8
616,871 + PP_0531 0.20 -0.2
616,871 + PP_0531 0.20 -0.6
616,871 + PP_0531 0.20 +2.0
616,872 - PP_0531 0.20 +0.9
616,872 - PP_0531 0.20 -1.4
616,872 - PP_0531 0.20 -0.3
616,872 - PP_0531 0.20 -1.2
616,872 - PP_0531 0.20 +1.4
616,872 - PP_0531 0.20 +0.9
616,872 - PP_0531 0.20 -2.2
616,884 - PP_0531 0.22 -0.6
616,953 - PP_0531 0.29 +0.8
616,953 - PP_0531 0.29 -0.2
617,003 + PP_0531 0.34 +0.6
617,003 + PP_0531 0.34 +1.7
617,004 - PP_0531 0.34 -2.9
617,004 - PP_0531 0.34 -2.4
617,004 - PP_0531 0.34 +1.8
617,004 - PP_0531 0.34 -1.2
617,004 - PP_0531 0.34 +0.3
617,021 + PP_0531 0.35 +3.4
617,022 - PP_0531 0.36 +0.1
617,273 - PP_0531 0.61 -0.2
617,273 - PP_0531 0.61 -0.4
617,280 + PP_0531 0.62 -0.4
617,303 + PP_0531 0.64 -1.2
617,303 + PP_0531 0.64 -1.3
617,303 + PP_0531 0.64 -2.4
617,303 + PP_0531 0.64 -1.7
617,304 - PP_0531 0.64 +0.4
617,332 + PP_0531 0.67 -1.1
617,333 - PP_0531 0.67 -0.4
617,333 - PP_0531 0.67 -0.6
617,333 - PP_0531 0.67 -0.4
617,333 - PP_0531 0.67 +1.3
617,333 - PP_0531 0.67 -1.4
617,393 + PP_0531 0.73 -0.4
617,480 + PP_0531 0.82 -2.8
617,480 + PP_0531 0.82 +0.1
617,481 - PP_0531 0.82 +0.1
617,481 - PP_0531 0.82 +1.2
617,481 - PP_0531 0.82 -1.0
617,481 - PP_0531 0.82 +0.4
617,481 - PP_0531 0.82 +0.1
617,481 - PP_0531 0.82 -0.2
617,482 + PP_0531 0.82 +0.3
617,482 + PP_0531 0.82 -0.0
617,483 - PP_0531 0.83 +0.1
617,483 - PP_0531 0.83 +3.7
617,483 - PP_0531 0.83 +0.4
617,489 + PP_0531 0.83 -1.0
617,490 - PP_0531 0.83 -0.9
617,627 + -2.0
617,628 - -0.2
617,628 - +1.4
617,639 + -3.8
617,640 - +0.4
617,640 - -0.6
617,977 - PP_0532 0.34 -3.4
618,033 + PP_0532 0.40 +0.1
618,033 + PP_0532 0.40 -0.9
618,034 - PP_0532 0.40 -2.9
618,034 - PP_0532 0.40 -3.9
618,034 - PP_0532 0.40 +0.4
618,034 - PP_0532 0.40 +0.4
618,034 - PP_0532 0.40 -0.2
618,199 - PP_0532 0.59 -0.7
618,447 + PP_0532 0.86 -1.4
618,447 + PP_0532 0.86 -1.4
618,623 - +3.2
618,634 - -2.2
618,634 - +0.4
618,642 + +0.8
618,642 + +2.5
618,643 - -0.6
618,652 + -0.2
618,653 - +0.0
618,812 - PP_0533 0.11 +0.5
619,182 + PP_0533 0.39 -4.9
619,473 + PP_0533 0.60 -0.8
619,474 - PP_0533 0.61 +0.1
619,485 + PP_0533 0.61 -1.3
619,486 - PP_0533 0.61 +1.0

Or see this region's nucleotide sequence