Strain Fitness in Pseudomonas putida KT2440 around PP_0492

Experiment: pH 9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0490 and PP_0491 overlap by 4 nucleotidesPP_0491 and PP_0492 overlap by 26 nucleotidesPP_0492 and PP_0493 are separated by 144 nucleotides PP_0490: PP_0490 - formate dehydrogenase-O, beta subunit, at 578,032 to 578,982 _0490 PP_0491: PP_0491 - formate dehydrogenase-O, gamma subunit, at 578,979 to 579,635 _0491 PP_0492: PP_0492 - formate dehydrogenase formation protein, at 579,610 to 580,566 _0492 PP_0493: PP_0493 - selenocysteine synthase, at 580,711 to 582,138 _0493 Position (kb) 579 580 581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 578.642 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.696 kb on - strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.728 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.845 kb on + strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.846 kb on - strand, within PP_0490at 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.938 kb on + strandat 578.939 kb on - strandat 578.939 kb on - strandat 579.006 kb on + strandat 579.007 kb on - strandat 579.023 kb on + strandat 579.023 kb on + strandat 579.024 kb on - strandat 579.024 kb on - strandat 579.196 kb on + strand, within PP_0491at 579.196 kb on + strand, within PP_0491at 579.196 kb on + strand, within PP_0491at 579.197 kb on - strand, within PP_0491at 579.197 kb on - strand, within PP_0491at 579.303 kb on + strand, within PP_0491at 579.303 kb on + strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.304 kb on - strand, within PP_0491at 579.391 kb on - strand, within PP_0491at 579.391 kb on - strand, within PP_0491at 579.489 kb on + strand, within PP_0491at 579.489 kb on + strand, within PP_0491at 579.490 kb on - strand, within PP_0491at 579.490 kb on - strand, within PP_0491at 579.650 kb on + strandat 579.650 kb on + strandat 579.651 kb on - strandat 579.651 kb on - strandat 579.779 kb on - strand, within PP_0492at 579.779 kb on - strand, within PP_0492at 579.801 kb on - strand, within PP_0492at 579.827 kb on + strand, within PP_0492at 579.956 kb on + strand, within PP_0492at 579.957 kb on - strand, within PP_0492at 580.010 kb on + strand, within PP_0492at 580.010 kb on + strand, within PP_0492at 580.011 kb on - strand, within PP_0492at 580.011 kb on - strand, within PP_0492at 580.069 kb on + strand, within PP_0492at 580.069 kb on + strand, within PP_0492at 580.258 kb on + strand, within PP_0492at 580.315 kb on + strand, within PP_0492at 580.315 kb on + strand, within PP_0492at 580.316 kb on - strand, within PP_0492at 580.435 kb on + strand, within PP_0492at 580.435 kb on + strand, within PP_0492at 580.436 kb on - strand, within PP_0492at 580.436 kb on - strand, within PP_0492at 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.499 kb on + strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.500 kb on - strandat 580.572 kb on + strandat 580.617 kb on + strandat 580.617 kb on + strandat 580.618 kb on - strandat 580.623 kb on + strandat 580.624 kb on - strandat 580.624 kb on - strandat 580.624 kb on - strandat 580.624 kb on - strandat 580.642 kb on + strandat 580.642 kb on + strandat 580.643 kb on - strandat 580.648 kb on + strandat 580.648 kb on + strandat 580.648 kb on + strandat 580.702 kb on + strandat 580.702 kb on + strandat 580.702 kb on + strandat 580.702 kb on + strandat 580.702 kb on + strandat 580.702 kb on + strandat 580.703 kb on - strandat 580.703 kb on - strandat 580.703 kb on - strandat 580.703 kb on - strandat 580.703 kb on - strandat 580.706 kb on - strandat 580.867 kb on - strand, within PP_0493at 581.193 kb on - strand, within PP_0493at 581.193 kb on - strand, within PP_0493at 581.331 kb on + strand, within PP_0493at 581.332 kb on - strand, within PP_0493at 581.332 kb on - strand, within PP_0493at 581.347 kb on + strand, within PP_0493at 581.404 kb on + strand, within PP_0493at 581.404 kb on + strand, within PP_0493at 581.405 kb on - strand, within PP_0493at 581.405 kb on - strand, within PP_0493at 581.436 kb on + strand, within PP_0493at 581.437 kb on - strand, within PP_0493at 581.454 kb on + strand, within PP_0493at 581.454 kb on + strand, within PP_0493at 581.455 kb on - strand, within PP_0493at 581.474 kb on + strand, within PP_0493at 581.475 kb on - strand, within PP_0493at 581.517 kb on + strand, within PP_0493at 581.549 kb on + strand, within PP_0493

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
remove
578,642 - PP_0490 0.64 -1.1
578,696 - PP_0490 0.70 +1.8
578,696 - PP_0490 0.70 +1.0
578,728 + PP_0490 0.73 +0.4
578,728 + PP_0490 0.73 -0.5
578,845 + PP_0490 0.85 -1.7
578,845 + PP_0490 0.85 -4.2
578,846 - PP_0490 0.86 -0.6
578,846 - PP_0490 0.86 -2.2
578,938 + -2.3
578,938 + -0.1
578,938 + -1.6
578,938 + +0.6
578,938 + -3.0
578,938 + -0.2
578,939 - -1.0
578,939 - -2.6
579,006 + +0.4
579,007 - +0.4
579,023 + -4.2
579,023 + +0.1
579,024 - +0.4
579,024 - +0.1
579,196 + PP_0491 0.33 -2.0
579,196 + PP_0491 0.33 +0.2
579,196 + PP_0491 0.33 -0.0
579,197 - PP_0491 0.33 +0.4
579,197 - PP_0491 0.33 +1.4
579,303 + PP_0491 0.49 +0.4
579,303 + PP_0491 0.49 -0.2
579,304 - PP_0491 0.49 -0.4
579,304 - PP_0491 0.49 +1.6
579,304 - PP_0491 0.49 +0.4
579,304 - PP_0491 0.49 -0.4
579,391 - PP_0491 0.63 -1.3
579,391 - PP_0491 0.63 -1.4
579,489 + PP_0491 0.78 +0.4
579,489 + PP_0491 0.78 +0.4
579,490 - PP_0491 0.78 -2.2
579,490 - PP_0491 0.78 -0.6
579,650 + -3.1
579,650 + +4.4
579,651 - +1.1
579,651 - +0.5
579,779 - PP_0492 0.18 +0.6
579,779 - PP_0492 0.18 +1.8
579,801 - PP_0492 0.20 -3.9
579,827 + PP_0492 0.23 +0.4
579,956 + PP_0492 0.36 -3.7
579,957 - PP_0492 0.36 +0.2
580,010 + PP_0492 0.42 -2.0
580,010 + PP_0492 0.42 +0.6
580,011 - PP_0492 0.42 +3.8
580,011 - PP_0492 0.42 +0.6
580,069 + PP_0492 0.48 +0.4
580,069 + PP_0492 0.48 +1.6
580,258 + PP_0492 0.68 -1.6
580,315 + PP_0492 0.74 -0.2
580,315 + PP_0492 0.74 +1.4
580,316 - PP_0492 0.74 +2.7
580,435 + PP_0492 0.86 +0.8
580,435 + PP_0492 0.86 +1.9
580,436 - PP_0492 0.86 -0.1
580,436 - PP_0492 0.86 +0.4
580,499 + +0.4
580,499 + +0.4
580,499 + -1.2
580,499 + -1.6
580,499 + +0.4
580,499 + -0.8
580,499 + +0.5
580,499 + -1.7
580,499 + +1.8
580,500 - +1.9
580,500 - -1.0
580,500 - -0.3
580,500 - +0.4
580,500 - +0.4
580,572 + +3.2
580,617 + -1.2
580,617 + -0.6
580,618 - -0.5
580,623 + +0.7
580,624 - +0.4
580,624 - +0.4
580,624 - +2.9
580,624 - +0.5
580,642 + +0.0
580,642 + +1.8
580,643 - -1.2
580,648 + -1.4
580,648 + -0.8
580,648 + -2.7
580,702 + -1.1
580,702 + -2.5
580,702 + +0.0
580,702 + +0.9
580,702 + -4.2
580,702 + +0.6
580,703 - -0.2
580,703 - +3.5
580,703 - +1.4
580,703 - +1.7
580,703 - -0.2
580,706 - +0.4
580,867 - PP_0493 0.11 -0.5
581,193 - PP_0493 0.34 -1.1
581,193 - PP_0493 0.34 +0.4
581,331 + PP_0493 0.43 -1.4
581,332 - PP_0493 0.43 -0.4
581,332 - PP_0493 0.43 -2.4
581,347 + PP_0493 0.45 -0.4
581,404 + PP_0493 0.49 -1.6
581,404 + PP_0493 0.49 +0.3
581,405 - PP_0493 0.49 -2.1
581,405 - PP_0493 0.49 +0.4
581,436 + PP_0493 0.51 -1.1
581,437 - PP_0493 0.51 -3.0
581,454 + PP_0493 0.52 +1.3
581,454 + PP_0493 0.52 -1.1
581,455 - PP_0493 0.52 +0.4
581,474 + PP_0493 0.53 -0.9
581,475 - PP_0493 0.54 +1.4
581,517 + PP_0493 0.56 +1.2
581,549 + PP_0493 0.59 +0.2

Or see this region's nucleotide sequence